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List of works by Jeroen Krijgsveld

'Corrigendum to "Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia" [Molecular Metabolism 5 (2) (2015) 67-78]'

scientific article published on 04 March 2020

5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion.

scientific article

A P4-ATPase protein interaction network reveals a link between aminophospholipid transport and phosphoinositide metabolism

scientific article published in February 2010

A high-quality catalog of the Drosophila melanogaster proteome

scientific article

A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells

scientific article published on October 2008

A quest for human and mouse embryonic stem cell-specific proteins.

scientific article published on 6 April 2006

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

scientific article

Activation of the TGFβ pathway impairs endothelial to haematopoietic transition

scientific article

Advances in stem cell proteomics

scientific article published on 11 August 2017

An AC-5 cathepsin B-like protease purified from Haemonchus contortus excretory secretory products shows protective antigen potential for lambs

scientific article published on 30 April 2009

An efficient and scalable pipeline for epitope tagging in mammalian stem cells using Cas9 ribonucleoprotein.

scientific article published on 11 April 2018

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

scientific article published on 01 September 2007

Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia

scientific article published on 26 November 2015

Author Correction: BCAT1 restricts αKG levels in AML stem cells leading to IDH-like DNA hypermethylation

scientific article published in Nature

Author Correction: BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation

scientific article published in Nature

Automated sample preparation with SP3 for low-input clinical proteomics

scientific article published on 01 January 2020

BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation

scientific article published on 8 November 2017

Bifunctional Sphingosine for Cell-Based Analysis of Protein-Sphingolipid Interactions

scientific article published on 11 November 2015

CHD4 is a RanGTP-dependent MAP that stabilizes microtubules and regulates bipolar spindle formation

scientific article published on 21 November 2013

Combining pulsed SILAC labeling and click-chemistry for quantitative secretome analysis

scientific article

Comparative Secretome Analyses of Primary Murine White and Brown Adipocytes Reveal Novel Adipokines

scientific article published on 22 August 2018

Comprehensive Identification of RNA-Binding Domains in Human Cells.

scientific article published on 19 July 2016

Comprehensive Identification of RNA-Binding Proteins by RNA Interactome Capture

scientific article published on 01 January 2016

Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition

scientific article

Comprehensive histone phosphorylation analysis and identification of Pf14-3-3 protein as a histone H3 phosphorylation reader in malaria parasites

scientific article (publication date: 2013)

Cooperative binding of two acetylation marks on a histone tail by a single bromodomain

scientific article

Crystal Structure of the CTP1L Endolysin Reveals How Its Activity Is Regulated by a Secondary Translation Product.

scientific article

Defining pluripotent stem cells through quantitative proteomic analysis.

scientific article published on February 2011

Developments in quantitative mass spectrometry for the analysis of proteome dynamics

scientific article published on 27 October 2012

Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes

scientific article

EPEN-04. CXorf67 MIMICS ONCOGENIC HISTONE H3 K27M MUTATIONS AND FUNCTIONS AS INTRINSIC INHIBITOR OF PRC2 FUNCTION IN AGGRESSIVE POSTERIOR FOSSA EPENDYMOMA

scientific article published on 23 April 2019

EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma

scientific article published on 01 July 2019

Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice

scientific article

Embryonic stem cell proteomics

scientific article published on August 2006

Exosomal secretion of cytoplasmic prostate cancer xenograft-derived proteins

scientific article published on 09 February 2009

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

scientific article published on 19 October 2016

Feeder-Free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile

article

GATA-1 forms distinct activating and repressive complexes in erythroid cells

scientific article

GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7

scientific article (publication date: 4 March 2005)

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

scientific article published on 05 June 2020

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila

scientific article published on 05 July 2016

Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency

scientific article published on December 2012

Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation

scientific article published on 11 February 2020

Human Proteome Organisation's 7th World Congress, 2008.

scientific article published in December 2008

IceR improves proteome coverage and data completeness in global and single-cell proteomics

scientific article published on 09 August 2021

Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes

scientific article

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

scientific article published on 08 June 2016

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

scientific article published on 2 November 2017

Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes

scientific article published in March 2010

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

scientific article published on 21 August 2014

Identification of secreted cysteine proteases from the parasitic nematode Haemonchus contortus detected by biotinylated inhibitors.

scientific article published on March 2006

Immediate protein targets of photodynamic treatment in carcinoma cells

scientific article published on 25 July 2008

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition

scientific article

In-gel isoelectric focusing of peptides as a tool for improved protein identification

scientific article published in July 2006

Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.

scientific article published on 19 August 2015

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

scientific article

Lung proteome alterations in a mouse model for nonallergic asthma.

scientific article

Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach

scientific article

MEDU-01. HDACi AND PLK1i ACT SYNERGISTICALLY IN MYC-AMPLIFIED MEDULLOBLASTOMA

scientific article published on 23 April 2019

MSQuant: a platform for stable isotope-based quantitative proteomics.

scientific article

Mass Spectrometric Analysis of theSchistosomamansoniTegumental Sub-proteome

article

Mass spectrometric identification of human prostate cancer-derived proteins in serum of xenograft-bearing mice

scientific article published on 19 May 2006

Mass spectrometry-based quantitative proteomics.

scientific article

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics

scientific article published on 13 July 2003

Metabolic labeling of model organisms using heavy nitrogen (15N).

scientific article published in January 2011

Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity

scientific article published on 13 March 2020

Munc13-4 is an effector of rab27a and controls secretion of lysosomes in hematopoietic cells

scientific article

Native thrombocidin-1 and unfolded thrombocidin-1 exert antimicrobial activity via distinct structural elements

scientific article

New advances in reproductive biomedicine

scientific article

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring

scientific article published on 27 December 2018

Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states

scientific article published on 30 May 2008

Novel Hsp90 partners discovered using complementary proteomic approaches

scientific article

Novel binding partners of Ldb1 are required for haematopoietic development

scientific article published on 15 November 2006

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

scientific article published on 01 January 2010

Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics

scientific article

Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome

scientific article published on 01 February 2020

Origin of monocytes and macrophages in a committed progenitor

scientific article published on 30 June 2013

Orthogonal separation techniques for the characterization of the yeast nuclear proteome.

scientific article

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

scientific article published in August 2009

Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells

scientific article published on 20 May 2008

Progressive methylation of ageing histones by Dot1 functions as a timer.

scientific article published on September 2011

Properties of isotope patterns and their utility for peptide identification in large-scale proteomic experiments.

scientific article

Protease-resistant streptavidin for interaction proteomics

scientific article published on 01 May 2020

Protein tyrosine kinase 2b inhibition reverts niche-associated resistance to tyrosine kinase inhibitors in AML

scientific article published in 2022

Proteome Biology of Stem Cells

scientific article published on 01 January 2008

Proteome and Secretome Characterization of Glioblastoma-Derived Neural Stem Cells

scientific article published on 21 November 2016

Proteome biology of stem cells

Proteomes of animal oocytes: what can we learn for human oocytes in the in vitro fertilization programme?

scientific article published on 03 April 2014

Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay

scientific article

Proteomic analysis of cell fate decision

scientific article published on 10 August 2013

Proteomic analysis of stem cell differentiation and early development

scientific article published on March 2012

Proteomic cornerstones of hematopoietic stem cell differentiation: distinct signatures of multipotent progenitors and myeloid committed cells

scientific article

Proteomics and human embryonic stem cells

scientific article published on 29 May 2008

Quantitative Proteomics Identifies TCF1 as a Negative Regulator of Foxp3 Expression in Conventional T Cells

scientific article published on 04 May 2020

Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research

scientific article

Quantitative proteomics by metabolic labeling of model organisms

scientific article

Quantitative proteomics reveals specific metabolic features of Acute Myeloid Leukemia stem cells

scientific article published on 18 June 2020

Quantitative proteomics reveals the dynamics of protein changes during Drosophila oocyte maturation and the oocyte-to-embryo transition

scientific article

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome

scientific article published on 28 June 2018

Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation

scientific article published on 06 January 2014

Recent liquid chromatographic-(tandem) mass spectrometric applications in proteomics

scientific article

Reduced chromatin binding of MYC is a key effect of HDAC inhibition in MYC amplified medulloblastoma

scientific article published on 21 August 2020

Repression of Human Papillomavirus Oncogene Expression under Hypoxia Is Mediated by PI3K/mTORC2/AKT Signaling

scientific article published on 12 February 2019

Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins

scientific article published on 20 March 2009

Secretome Analysis of Cardiomyocytes Identifies PCSK6 as a Novel Player in Cardiac Remodeling After Myocardial Infarction

scientific article published on 26 February 2020

Secretome profiling of heterotypic spheroids suggests a role of fibroblasts in HIF-1 pathway modulation and colorectal cancer photodynamic resistance

scientific article published on 12 February 2019

Selective enrichment of newly synthesized proteins for quantitative secretome analysis

scientific article

Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

scientific article published on 01 January 2019

Site-specific methylation of 18S ribosomal RNA by SNORD42A is required for Acute Myeloid Leukemia cell proliferation

scientific article published on 25 February 2020

Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC).

scientific article published on 23 January 2018

Spatial distribution of endogenous tissue protease activity in gastric carcinoma mapped by MALDI mass spectrometry imaging

scientific article published on 07 October 2018

Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection

scientific article published on 08 June 2020

Specific RNP capture with antisense LNA/DNA mixmers.

scientific article

Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss

scientific article published on 08 April 2022

Src kinase modulates the apoptotic p53 pathway by altering HIPK2 localization.

scientific article published on 25 October 2013

Suppression of Mediator is regulated by Cdk8-dependent Grr1 turnover of the Med3 coactivator

scientific article

System-wide identification of RNA-binding proteins by interactome capture.

scientific article

Targeted analysis of protein termini.

scientific article

Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish.

scientific article

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

article

The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.

scientific article published on 20 July 2016

The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest

The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest

scientific article published on 06 December 2018

The RNA-Binding Protein YBX3 Controls Amino Acid Levels by Regulating SLC mRNA Abundance

scientific article published on 01 June 2019

The RNA-binding protein repertoire of embryonic stem cells.

scientific article

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

scientific article published on 3 December 2015

The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ

scientific article published in Nature

The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ

The ecoresponsive genome of Daphnia pulex

scientific article

The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells

scientific article

The quest of cell surface markers for stem cell therapy

scientific article published on 24 July 2020

The time is right: proteome biology of stem cells

scientific article published on March 2008

Transcription Factor 7 Limits Regulatory T Cell Generation in the Thymus.

scientific article published on 31 August 2015

Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4.

scientific article published on 17 September 2018

Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment

scientific article

Turning Over Paradigms in Protein Decay

scientific article published in November 2016

Ultrasensitive proteome analysis using paramagnetic bead technology

scientific article

Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics

scientific article published on 10 October 2020

Widespread changes in the posttranscriptional landscape at the Drosophila oocyte-to-embryo transition

scientific article

Worms from venus and mars: proteomics profiling of sexual differences in Caenorhabditis elegans using in vivo 15N isotope labeling.

scientific article published on January 2010

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