List of works - Carla Schmidt

A comparative cross-linking strategy to probe conformational changes in protein complexes

scientific article

A novel sample preparation strategy for shotgun lipidomics of phospholipids employing multilamellar vesicles.

scientific article

Absolute Quantification of Proteins Using Standard Peptides and Multiple Reaction Monitoring

article by Carla Schmidt & Henning Urlaub published 2012 in Methods in Molecular Biology

Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks

scientific article

Acetylation and phosphorylation control both local and global stability of the chloroplast F1 ATP synthase

scientific article published on 9 March 2017

Alternatively spliced isoforms of AUF1 regulate a miRNA-mRNA interaction differentially through their YGG motif

scientific article published on 14 September 2020

An automated in-gel digestion/iTRAQ-labeling workflow for robust quantification of gel-separated proteins

Analyzing the Protein Assembly and Dynamics of the Human Spliceosome with SILAC

Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia

scientific article published on 28 September 2021

Atomic model for the membrane-embedded VO motor of a eukaryotic V-ATPase

scientific article published on 24 October 2016

Combining Chemical Cross-linking and Mass Spectrometry of Intact Protein Complexes to Study the Architecture of Multi-subunit Protein Assemblies.

scientific article

Combining cryo-electron microscopy (cryo-EM) and cross-linking mass spectrometry (CX-MS) for structural elucidation of large protein assemblies

scientific article published on 25 October 2017

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation.

scientific article published in January 2013

Correction: Crystal Structure of the Human Short Coiled Coil Protein and Insights into SCOC-FEZ1 Complex Formation.

correction of a scientific article; published on 30 October 2013

Cross-linking mass spectrometry uncovers protein interactions and functional assemblies in synaptic vesicle membranes

scientific article published on 08 February 2021

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

scientific article

Crystal Structure of the Human Short Coiled Coil Protein and Insights into SCOC-FEZ1 Complex Formation

scientific article

Decision-Making in Cascade Complexes Harboring crRNAs of Altered Length

scientific article published on 01 September 2019

Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring

scientific article

Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding

scientific article published on 30 June 2016

Dynamic protein ligand interactions--insights from MS.

scientific article

Editorial overview: Biophysical methods: behind the scenes of the cryo-EM revolution

scientific article published in October 2017

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

scientific article published on 22 May 2019

Formation and Stoichiometry of CRISPR-Cascade Complexes with Varying Spacer Lengths Revealed by Native Mass Spectrometry

scientific article published on 30 January 2020

Hsp70 forms antiparallel dimers stabilized by post-translational modifications to position clients for transfer to Hsp90.

scientific article published on 23 April 2015

Insights into Eukaryotic Translation Initiation from Mass Spectrometry of Macromolecular Protein Assemblies

scientific article

Instrument response of phosphatidylglycerol lipids with varying fatty acyl chain length in nano-ESI shotgun experiments

scientific article published on 06 June 2019

Investigation of protein–RNA interactions by mass spectrometry—Techniques and applications

Mass spectrometry of membrane protein complexes

scientific article published on 01 June 2019

Mass spectrometry-A versatile tool for characterising the lipid environment of membrane protein assemblies

scientific article published on 03 April 2019

Mass spectrometry-based relative quantification of proteins in precatalytic and catalytically active spliceosomes by metabolic labeling (SILAC), chemical labeling (iTRAQ), and label-free spectral count

scientific article published on 21 January 2014

Native mass spectrometry-A valuable tool in structural biology

scientific article published on 01 October 2020

Oligomerisation of Synaptobrevin-2 Studied by Native Mass Spectrometry and Chemical Cross-Linking

scientific article published on 12 June 2018

Protein-Lipid Interactions Stabilize the Oligomeric State of BOR1p from Saccharomyces cerevisiae

scientific article published on 25 September 2019

Proteomic basics — quantification and post-translational modifications of proteins: The 3rd European Summer School in Kloster Neustift

article

Quantitative mass spectrometry-based proteomics: an overview

scientific article

Small-Molecule-Induced Soluble Oligomers of α-Synuclein with Helical Structure

scientific article published in August 2017

Structural and Functional Analyses of the Human PDH Complex Suggest a "Division-of-Labor" Mechanism by Local E1 and E3 Clusters

scientific article published on 23 May 2019

Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome

scientific article published on 23 August 2019

Structural characterisation of medically relevant protein assemblies by integrating mass spectrometry with computational modelling

scientific article

Structure based biophysical characterization of the PROPPIN Atg18 shows Atg18 oligomerization upon membrane binding.

scientific article published on 25 October 2017

Structure of the human MHC-I peptide-loading complex

scientific article published on 6 November 2017

Surface Accessibility and Dynamics of Macromolecular Assemblies Probed by Covalent Labeling Mass Spectrometry and Integrative Modeling

scientific article (publication date: 7 February 2017)

The CroCo cross-link converter: a user-centred tool to convert results from cross-linking mass spectrometry experiments

scientific article published on 01 February 2020

The joining of the Hsp90 and Hsp70 chaperone cycles yields transient interactions and stable intermediates: insights from mass spectrometry

scientific article published in July 2015

Topological models of heteromeric protein assemblies from mass spectrometry: application to the yeast eIF3:eIF5 complex

scientific article

Uncovering the Early Assembly Mechanism for Amyloidogenic β2-Microglobulin Using Cross-linking and Native Mass Spectrometry

scientific article

eIF2 interactions with initiator tRNA and eIF2B are regulated by post-translational modifications and conformational dynamics

scientific article (publication date: 2015)

eIF2B is a decameric guanine nucleotide exchange factor with a γ2ε2 tetrameric core

scientific article

iTRAQ-Labeling of In-Gel Digested Proteins for Relative Quantification

article published in 2009

‘Proteomic Basics – Sample Preparation and Separation’: The 1st European Summer School in Kloster Neustift 12–18 August, 2007 Brixen/Bressanone, South Tyrol, Italy

article

List of works by Carla Schmidt

A comparative cross-linking strategy to probe conformational changes in protein complexes

A novel sample preparation strategy for shotgun lipidomics of phospholipids employing multilamellar vesicles.

Absolute Quantification of Proteins Using Standard Peptides and Multiple Reaction Monitoring

Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks

Acetylation and phosphorylation control both local and global stability of the chloroplast F1 ATP synthase

Alternatively spliced isoforms of AUF1 regulate a miRNA-mRNA interaction differentially through their YGG motif

An automated in-gel digestion/iTRAQ-labeling workflow for robust quantification of gel-separated proteins

Analyzing the Protein Assembly and Dynamics of the Human Spliceosome with SILAC

Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia

Atomic model for the membrane-embedded VO motor of a eukaryotic V-ATPase

Combining Chemical Cross-linking and Mass Spectrometry of Intact Protein Complexes to Study the Architecture of Multi-subunit Protein Assemblies.

Combining cryo-electron microscopy (cryo-EM) and cross-linking mass spectrometry (CX-MS) for structural elucidation of large protein assemblies

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation.

Correction: Crystal Structure of the Human Short Coiled Coil Protein and Insights into SCOC-FEZ1 Complex Formation.

Cross-linking mass spectrometry uncovers protein interactions and functional assemblies in synaptic vesicle membranes

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

Crystal Structure of the Human Short Coiled Coil Protein and Insights into SCOC-FEZ1 Complex Formation

Decision-Making in Cascade Complexes Harboring crRNAs of Altered Length

Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring

Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding

Dynamic protein ligand interactions--insights from MS.

Editorial overview: Biophysical methods: behind the scenes of the cryo-EM revolution

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Formation and Stoichiometry of CRISPR-Cascade Complexes with Varying Spacer Lengths Revealed by Native Mass Spectrometry

Hsp70 forms antiparallel dimers stabilized by post-translational modifications to position clients for transfer to Hsp90.

Insights into Eukaryotic Translation Initiation from Mass Spectrometry of Macromolecular Protein Assemblies

Instrument response of phosphatidylglycerol lipids with varying fatty acyl chain length in nano-ESI shotgun experiments

Investigation of protein–RNA interactions by mass spectrometry—Techniques and applications

Mass spectrometry of membrane protein complexes

Mass spectrometry-A versatile tool for characterising the lipid environment of membrane protein assemblies

Mass spectrometry-based relative quantification of proteins in precatalytic and catalytically active spliceosomes by metabolic labeling (SILAC), chemical labeling (iTRAQ), and label-free spectral count

Native mass spectrometry-A valuable tool in structural biology

Oligomerisation of Synaptobrevin-2 Studied by Native Mass Spectrometry and Chemical Cross-Linking

Protein-Lipid Interactions Stabilize the Oligomeric State of BOR1p from Saccharomyces cerevisiae

Proteomic basics — quantification and post-translational modifications of proteins: The 3rd European Summer School in Kloster Neustift

Quantitative mass spectrometry-based proteomics: an overview

Small-Molecule-Induced Soluble Oligomers of α-Synuclein with Helical Structure

Structural and Functional Analyses of the Human PDH Complex Suggest a "Division-of-Labor" Mechanism by Local E1 and E3 Clusters

Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome

Structural characterisation of medically relevant protein assemblies by integrating mass spectrometry with computational modelling

Structure based biophysical characterization of the PROPPIN Atg18 shows Atg18 oligomerization upon membrane binding.

Structure of the human MHC-I peptide-loading complex

Surface Accessibility and Dynamics of Macromolecular Assemblies Probed by Covalent Labeling Mass Spectrometry and Integrative Modeling

The CroCo cross-link converter: a user-centred tool to convert results from cross-linking mass spectrometry experiments

The joining of the Hsp90 and Hsp70 chaperone cycles yields transient interactions and stable intermediates: insights from mass spectrometry

Topological models of heteromeric protein assemblies from mass spectrometry: application to the yeast eIF3:eIF5 complex

Uncovering the Early Assembly Mechanism for Amyloidogenic β2-Microglobulin Using Cross-linking and Native Mass Spectrometry

eIF2 interactions with initiator tRNA and eIF2B are regulated by post-translational modifications and conformational dynamics

eIF2B is a decameric guanine nucleotide exchange factor with a γ2ε2 tetrameric core

iTRAQ-Labeling of In-Gel Digested Proteins for Relative Quantification

‘Proteomic Basics – Sample Preparation and Separation’: The 1st European Summer School in Kloster Neustift 12–18 August, 2007 Brixen/Bressanone, South Tyrol, Italy