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List of works by Imad Abugessaisa

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An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article
Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article
Data integration in the era of omics: current and future challenges

scientific article
An integrated expression atlas of miRNAs and their promoters in human and mouse.

scientific article
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016
FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

scientific article
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications
STATegra EMS: an Experiment Management System for complex next-generation omics experiments

scientific article published on March 13, 2014
Comparative transcriptomics of primary cells in vertebrates

scientific article published on 27 July 2020
Systems Medicine: from molecular features and models to the clinic in COPD.

scientific article published on 28 November 2014
SCPortalen: human and mouse single-cell centric database

scientific article published on 17 October 2017
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

scientific article published on 29 August 2017
Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative

scientific article published on 14 March 2015
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

scientific article published on 01 January 2019
Implementation of the CDC translational informatics platform--from genetic variants to the national Swedish Rheumatology Quality Register

scientific article published on 2 April 2013
Accelerating translational research by clinically driven development of an informatics platform--a case study

scientific article
Pediatric systems medicine: evaluating needs and opportunities using congenital heart block as a case study

scientific article published on 31 January 2013
Incidence and risk factors for adalimumab and infliximab anti-drug antibodies in rheumatoid arthritis: A European retrospective multicohort analysis

scientific article published on 12 October 2018
Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scientific article
Linking FANTOM5 CAGE peaks to annotations with CAGEscan

scientific article published on 3 October 2017
Monitoring transcription initiation activities in rat and dog.

scientific article
Geospatial metadata extraction from product description document applying methods from ontology engineering

article published in 2010
Genome Annotation

scientific article published on January 2017
Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020
The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.

scientific article published on January 2017
Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data

scientific article published on 15 January 2022
Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Single-cell transcriptomics, scRNA-Seq and C1 CAGE discovered distinct phases of pluripotency during naïve-to-primed conversion in mice

refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites

scientific article published on 08 May 2019
Systematic identification of cis-interacting lncRNAs and their targets

OMIC SIGNATURES IN FRAILTY AND FRAILTY DIAGNOSIS

scholarly article in Innovation in Aging, vol. 1, Suppl 1, June 2017
Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scholarly article published in Scientific Data
Antisense oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

scientific article published on 19 November 2020

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