List of works - Gustavo Parisi

Addressing the Role of Conformational Diversity in Protein Structure Prediction

scientific article

Analysis of two polyhydroxyalkanoate synthases in Bradyrhizobium japonicum USDA 110.

scientific article published on 10 May 2013

BeEP Server: Using evolutionary information for quality assessment of protein structure models.

scientific article

Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools

scientific article published on 14 February 2019

Characterization of a nitric oxide synthase from the plant kingdom: NO generation from the green alga Ostreococcus tauri is light irradiance and growth phase dependent

scientific article

CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state.

scientific article

CoDNaS: a database of conformational diversity in the native state of proteins

scientific article published on 11 July 2013

Computational biology in Argentina

scientific article

Computational characterisation of potential RNA-binding sites in arenavirus nucleocapsid proteins

scientific article published in January 1996

Conformational diversity analysis reveals three functional mechanisms in proteins

scientific article

Conformational diversity and the emergence of sequence signatures during evolution.

scientific article

Disorder transitions and conformational diversity cooperatively modulate biological function in proteins.

scientific article published on 02 April 2016

Distribution of mosquitoes in the south east of Argentina and first report on the analysis based on 18S rDNA and COI sequences.

scientific article

Dynactins p25 and p27 are predicted to adopt the LbetaH fold.

scientific article

Ensembles from ordered and disordered proteins reveal similar structural constraints during evolution

Evaluating the effect of mutations and ligand binding on transthyretin homotetramer dynamics.

scientific article published on 13 July 2017

Evolutionary Analysis of γ-Carbonic Anhydrase and Structurally Related Proteins

scientific article published on 01 March 2000

Evolutionary Conserved Positions Define Protein Conformational Diversity

scientific article

Evolutionary conservation of protein backbone flexibility.

scientific article

Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana.

scientific article published on January 2008

Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I

article

Gamma carbonic anhydrases in plant mitochondria.

scientific article published in May 2004

Generality of the structurally constrained protein evolution model: assessment on representatives of the four main fold classes.

scientific article

Hb Wilde and Hb Patagonia: two novel elongated beta-globin variants causing dominant beta-thalassemia

scientific article published on 27 November 2014

Homology modeling in a dynamical world.

scientific article published on 17 August 2017

How is structural divergence related to evolutionary information?

scientific article published on 25 June 2018

Identification of a new protective antigen of Bordetella pertussis

scientific article published on 30 August 2011

Large scale analysis of protein conformational transitions from aqueous to non-aqueous media.

scientific article published on 30 January 2018

Large-scale mapping of bioactive peptides in structural and sequence space

scientific article

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

scientific article published on 10 November 2017

Molecular cloning and characterization of procirsin, an active aspartic protease precursor from Cirsium vulgare (Asteraceae).

scientific article published on 21 June 2012

Mutations in two putative phosphorylation motifs in the tomato pollen receptor kinase LePRK2 show antagonistic effects on pollen tube length.

scientific article

Network analysis of dynamically important residues in protein structures mediating ligand-binding conformational changes

scientific article published on 04 July 2019

On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein

scientific article

On the dynamical incompleteness of the Protein Data Bank

scientific article published on 2 August 2017

On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions

scientific article

PCDB: a database of protein conformational diversity

scientific article

Pockets as structural descriptors of EGFR kinase conformations

scientific article published on 11 December 2017

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

scientific article (publication date: 16 September 2008)

Protein conformational diversity correlates with evolutionary rate.

scientific article published on 5 April 2013

Protein conformational diversity modulates sequence divergence

scientific article

Quaternary structure constraints on evolutionary sequence divergence.

scientific article published on 23 November 2006

Rapid evolution of cytochrome c oxidase subunit II in camelids (Tylopoda, Camelidae)

scientific article published on 01 December 2006

Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations

article

Starch-synthase III family encodes a tandem of three starch-binding domains

scientific article published on 01 October 2006

Structural constraints and emergence of sequence patterns in protein evolution

scientific article published on 01 May 2001

Targeting a cross-reactive Gly m 5 soy peptide as responsible for hypersensitivity reactions in a milk allergy mouse model

scientific article published on 09 January 2014

Teaching noncovalent interactions using protein molecular evolution.

scientific article published in July 2008

The structurally constrained protein evolution model accounts for sequence patterns of the LbetaH superfamily

scientific article

The tight-adhesion proteins TadGEF of Bradyrhizobium diazoefficiens USDA 110 are involved in cell adhesion and infectivity on soybean roots

scientific article published on 23 October 2015

Twenty-One Novel EGFR Kinase Domain variants in Patients with Nonsmall Cell Lung Cancer.

scientific article

Two novel unstable hemoglobin variants due to in-frame deletions of key amino acids in the β-globin chain

scientific article published on 10 January 2018

List of works by Gustavo Parisi

Addressing the Role of Conformational Diversity in Protein Structure Prediction

Analysis of two polyhydroxyalkanoate synthases in Bradyrhizobium japonicum USDA 110.

BeEP Server: Using evolutionary information for quality assessment of protein structure models.

Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools

Characterization of a nitric oxide synthase from the plant kingdom: NO generation from the green alga Ostreococcus tauri is light irradiance and growth phase dependent

CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state.

CoDNaS: a database of conformational diversity in the native state of proteins

Computational biology in Argentina

Computational characterisation of potential RNA-binding sites in arenavirus nucleocapsid proteins

Conformational diversity analysis reveals three functional mechanisms in proteins

Conformational diversity and the emergence of sequence signatures during evolution.

Disorder transitions and conformational diversity cooperatively modulate biological function in proteins.

Distribution of mosquitoes in the south east of Argentina and first report on the analysis based on 18S rDNA and COI sequences.

Dynactins p25 and p27 are predicted to adopt the LbetaH fold.

Ensembles from ordered and disordered proteins reveal similar structural constraints during evolution

Evaluating the effect of mutations and ligand binding on transthyretin homotetramer dynamics.

Evolutionary Analysis of γ-Carbonic Anhydrase and Structurally Related Proteins

Evolutionary Conserved Positions Define Protein Conformational Diversity

Evolutionary conservation of protein backbone flexibility.

Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana.

Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I

Gamma carbonic anhydrases in plant mitochondria.

Generality of the structurally constrained protein evolution model: assessment on representatives of the four main fold classes.

Hb Wilde and Hb Patagonia: two novel elongated beta-globin variants causing dominant beta-thalassemia

Homology modeling in a dynamical world.

How is structural divergence related to evolutionary information?

Identification of a new protective antigen of Bordetella pertussis

Large scale analysis of protein conformational transitions from aqueous to non-aqueous media.

Large-scale mapping of bioactive peptides in structural and sequence space

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Molecular cloning and characterization of procirsin, an active aspartic protease precursor from Cirsium vulgare (Asteraceae).

Mutations in two putative phosphorylation motifs in the tomato pollen receptor kinase LePRK2 show antagonistic effects on pollen tube length.

Network analysis of dynamically important residues in protein structures mediating ligand-binding conformational changes

On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein

On the dynamical incompleteness of the Protein Data Bank

On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions

PCDB: a database of protein conformational diversity

Pockets as structural descriptors of EGFR kinase conformations

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

Protein conformational diversity correlates with evolutionary rate.

Protein conformational diversity modulates sequence divergence

Quaternary structure constraints on evolutionary sequence divergence.

Rapid evolution of cytochrome c oxidase subunit II in camelids (Tylopoda, Camelidae)

Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations

Starch-synthase III family encodes a tandem of three starch-binding domains

Structural constraints and emergence of sequence patterns in protein evolution

Targeting a cross-reactive Gly m 5 soy peptide as responsible for hypersensitivity reactions in a milk allergy mouse model

Teaching noncovalent interactions using protein molecular evolution.

The structurally constrained protein evolution model accounts for sequence patterns of the LbetaH superfamily

The tight-adhesion proteins TadGEF of Bradyrhizobium diazoefficiens USDA 110 are involved in cell adhesion and infectivity on soybean roots

Twenty-One Novel EGFR Kinase Domain variants in Patients with Nonsmall Cell Lung Cancer.

Two novel unstable hemoglobin variants due to in-frame deletions of key amino acids in the β-globin chain