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List of works by Andres Santos

3D liver segmentation in preoperative CT images using a level-sets active surface method

scientific article published in January 2009

3D+t morphological processing: applications to embryogenesis image analysis.

scientific article

A 4D-PET block detector based on Silicon Photomultipliers

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis

scientific article

A hybrid spatiotemporal and Hough-based motion estimation approach applied to magnetic resonance cardiac images

Age-related intramyocardial patterns in healthy subjects evaluated with Doppler tissue imaging

scientific article published on 01 June 2005

An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis.

scientific article

Analysis and interpretation of dynamic FDG PET oncological studies using data reduction techniques

scientific article

Applying watershed algorithms to the segmentation of clustered nuclei

scientific article published in August 1997

Assembling models of embryo development: image analysis and the construction of digital atlases

scientific article published on June 2012

Assessment of 3D DCE-MRI of the kidneys using non-rigid image registration and segmentation of voxel time courses.

scientific article published on 9 January 2009

Automated FISH spot counting in interphase nuclei: statistical validation and data correction.

scientific article

Automated processing of zebrafish imaging data: a survey

scientific article (publication date: September 2013)

Automatic detection of cellular necrosis in epithelial cell cultures

article

Automatic glaucoma classification using color fundus images based on convolutional neural networks and transfer learning

scientific article published on 25 January 2019

Automatic motion compensation of free breathing acquired myocardial perfusion data by using independent component analysis

scientific article

Automatic quantification of viability in epithelial cell cultures by texture analysis.

scientific article

Can voronoi diagram model cell geometries in early sea-urchin embryogenesis?

Cardiac motion analysis from ultrasound sequences using nonrigid registration: validation against Doppler tissue velocity

scientific article published on 01 April 2006

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy

scientific article published in August 2010

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements

scientific article

Cerebral metabolic changes induced by clozapine in schizophrenia and related to clinical improvement

scientific article published on 10 September 2004

Cerebral metabolic patterns in chronic and recent-onset schizophrenia

scientific article published in February 2003

Cerebral metabolism and risperidone treatment in schizophrenia

scientific article

Characterization and test of a data acquisition system for PET

Combining sea urchin embryo cell lineages by error-tolerant graph matching

scientific article

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study.

scientific article published on 23 July 2014

DCE@urLAB: a dynamic contrast-enhanced MRI pharmacokinetic analysis tool for preclinical data.

scientific article

Data on the verification and validation of segmentation and registration methods for diffusion MRI.

scientific article

Deciphering microvascular changes after myocardial infarction through 3D fully automated image analysis

scientific article published on 30 January 2018

Development and characterization of a modular acquisition system for a 4D PET block detector

article

Development of a simplified simulation model for performance characterization of a pixellated CdZnTe multimodality imaging system.

scientific article published in February 2008

Editorial

scientific article published in August 2006

Effect of acute hyperglycemia on moderately hypothermic GL261 mouse glioma monitored by T1-weighted DCE MRI.

scientific article

Efficient computation of amplitude and phase maps in nuclear medicine equilibrium-gated cardiac studies

scientific article published in March 1997

Efficient methodologies for system matrix modelling in iterative image reconstruction for rotating high-resolution PET.

scientific article published on 12 March 2010

Evaluation of data reduction methods for dynamic PET series based on Monte Carlo techniques and the NCAT phantom

Exploiting quasiperiodicity in motion correction of free-breathing myocardial perfusion MRI.

scientific article published on 3 May 2010

Feasibility assessment of the interactive use of a Monte Carlo algorithm in treatment planning for intraoperative electron radiation therapy

scientific article published on 3 November 2014

Feasibility study of the use of similarity maps in the evaluation of oncological dynamic positron emission tomography images.

scientific article published in January 2005

First full-beam PET acquisitions in proton therapy with a modular dual-head dedicated system.

scientific article published on 10 December 2013

Flexible image registration for the identification of best fitted protein models in 3D-EM maps

FocusDET, a new toolbox for SISCOM analysis. Evaluation of the registration accuracy using Monte Carlo simulation

scientific article published on January 2013

Geometrical and Monte Carlo projectors in 3D PET reconstruction.

scientific article published on November 2010

Image analysis for understanding embryo development: a bridge from microscopy to biological insights.

scientific article published on 03 September 2011

Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos.

scientific article published on January 2011

Including anatomical and functional information in MC simulation of PET and SPECT brain studies. Brain-VISET: a voxel-based iterative method

scientific article published on 22 May 2014

Increasing temporal resolution of 3D transesophageal ultrasound by rigid body registration of sequential, temporally offset sequences

Intramyocardial analysis of regional systolic and diastolic function in ischemic heart disease with Doppler tissue imaging: role of the different myocardial layers

scientific article published in February 2002

Iterative image reconstruction for clinical PET using ordered subsets, median root prior, and a web-based interface

scientific article published in May 2002

List-mode-based reconstruction for respiratory motion correction in PET using non-rigid body transformations.

scientific article published on 9 August 2007

MBIS: multivariate Bayesian image segmentation tool. ⬇️

scientific article

MRI visualization of small structures using improved surface coils.

scientific article published in January 1998

Magnetic resonance imaging in the evaluation of inflammatory lesions in muscular and soft tissues: an experimental infection model induced by Candida albicans

article

Massively parallelizable list-mode reconstruction using a Monte Carlo-based elliptical Gaussian model

scientific article published in January 2013

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy

scientific article published in December 2011

Monte Carlo based dose estimation in intraoperative radiotherapy

Motion estimation of tagged cardiac magnetic resonance images using variational techniques

scientific article published on 21 April 2010

Multimodality image integration for radiotherapy treatment: an easy approach

scholarly article published 28 May 2001

Multiresolution analysis in fMRI: sensitivity and specificity in the detection of brain activation

scientific article published in September 2001

Neurosurgery for functional disorders guided by multimodality imaging

New techniques for the assessment of regional left ventricular wall motion.

scientific article published on October 2003

Non-rigid motion compensation in free-breathing myocardial perfusion magnetic resonance imaging

Novel lambda FRET spectral confocal microscopy imaging method

scientific article published in January 2009

Optimal multiresolution 3D level-set method for liver segmentation incorporating local curvature constraints

scientific article

Organ-focused mutual information for nonrigid multimodal registration of liver CT and Gd-EOB-DTPA-enhanced MRI.

scientific article published on 13 September 2013

P300 amplitude as a possible correlate of frontal degeneration in schizophrenia

scientific article

PET, CT, and MR image registration of the rat brain and skull

Performance analysis of a low-cost small animal PET/SPECT scanner

Performance evaluation of principal component analysis in dynamic FDG-PET studies of recurrent colorectal cancer.

scientific article

Processing pipeline for digitalizing the lineage tree of early zebrafish embryogenesis from multiharmonic imaging

Programmable electronics for low-cost small animal PET/SPECT imaging

Proof of concept of an imaging system demonstrator for PET applications with SiPM

Radial versus longitudinal myocardial deformation from gray-scale echocardiography

scientific article published on 30 July 2007

Real Time Signal Processing and Data Handling with dedicated hardware in handheld OCT Device

scholarly article by P. Guerra et al published 5 November 2015 in Journal of Instrumentation

Real-Time Digital Timing in Positron Emission Tomography

Remote analysis of sputum smears for mycobacterium tuberculosis quantification using digital crowdsourcing

scientific article published in 2022

Right ventricle segmentation from cardiac MRI: a collation study

scientific article published on 28 October 2014

Spatio-temporal filtering with morphological operators for robust cell migration estimation in ”in-vivo” images

Spatio-temporal nonrigid registration for ultrasound cardiac motion estimation

scientific article published in September 2005

Speckle reduction process based on digital filtering and wavelet compounding in optical coherence tomography for dermatology

Surface-driven registration method for the structure-informed segmentation of diffusion MR images

scientific article

Timing performances of a data acquisition system for Time of Flight PET

Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification.

scientific article

Tracking of regions-of-interest in myocardial contrast echocardiography

scientific article published in March 2004

Twister Segment Morphological Filtering. A New Method for Live Zebrafish Embryos Confocal Images Processing

scholarly article published 2007

Undersampling to acquire nuclear magnetic resonance images.

scientific article published on July 2004

Unsupervised estimation of myocardial displacement from tagged MR sequences using nonrigid registration

scientific article published in January 2008

Wavelet-based image fusion in multi-view three-dimensional microscopy

scientific article

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