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List of works by Ludovic Cottret

A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis

scientific article

A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum

scientific article

A genomic reappraisal of symbiotic function in the aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations

scientific article

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks

scientific article published on 10 July 2012

An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages

scientific article published on 02 March 2020

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

scientific article

An introduction to metabolic networks and their structural analysis

scientific article published on October 2008

Control of primary metabolism by a virulence regulatory network promotes robustness in a plant pathogen

scientific article

CycADS: an annotation database system to ease the development and update of BioCyc databases

scientific article

Deciphering the connectivity structure of biological networks using MixNet

scientific article

EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

scientific article published on 15 August 2020

Evolutionary History of Plant LysM Receptor Proteins Related to Root Endosymbiosis

article

Exploration of the core metabolism of symbiotic bacteria

scientific article

Family-Companion: analyse, visualise, browse, query and share your homology clusters

FlexFlux: combining metabolic flux and regulatory network analyses

scientific article published on 15 December 2015

Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth

scientific article published on 31 March 2020

Genomic Prediction of Sunflower Hybrids Oil Content.

scientific article published on 21 September 2017

Graph methods for the investigation of metabolic networks in parasitology

scientific article published on 06 May 2010

Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata

scientific article

Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes

scientific article

LysM Receptor-Like Kinase and LysM Receptor-Like Protein Families: An Update on Phylogeny and Functional Characterization

scientific article published on 24 October 2018

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks

scientific article published on 5 May 2010

MetExplore: collaborative edition and exploration of metabolic networks

scientific article published on 30 April 2018

MetExploreViz: web component for interactive metabolic network visualization

scientific article published on 15 September 2017

Metabolic network visualization eliminating node redundance and preserving metabolic pathways

scientific article

Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula

article

Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii

scientific article published on 07 January 2019

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum

scientific article published on 14 October 2009

Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks

Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

scientific article

Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

article

The Rosa genome provides new insights into the domestication of modern roses. ⬇️

scientific article published on 30 April 2018

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

scientific article

Transcriptome database resource and gene expression atlas for the rose

scientific article

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

scientific article

Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining

scientific article

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