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List of works by Charles Plessy

A genome database for a Japanese population of the larvacean Oikopleura dioica

scientific article published on 16 July 2020

A promoter-level mammalian expression atlas

scientific article

A resource for transcriptomic analysis in the mouse brain

scientific article

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications

Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology

scientific article

Community-driven computational biology with Debian Linux

scientific article (publication date: 21 December 2010)

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation

scientific article

Conserved and acquired features of neurogenin1 regulation

scientific article published on 20 October 2004

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Decoding Neuronal Diversification by Multiplexed Single-cell RNA-Seq

scientific article published on 11 March 2021

Definition of Promotome-Transcriptome Architecture Using CAGEscan

Digital expression profiling of the compartmentalized translatome of Purkinje neurons

scientific article

Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes

scientific article

Expression of brain subtype creatine kinase in the zebrafish embryo.

scientific article published in December 2001

Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo

scientific article published on 12 January 2004

Genome-wide analysis of mammalian promoter architecture and evolution

scientific article (publication date: June 2006)

Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary

scientific article published on 31 March 2004

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

scientific article

High-throughput verification of transcriptional starting sites by Deep-RACE.

scientific article

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

scientific article published on 3 October 2017

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

scientific article

Machine-driven parameter screen of biochemical reactions

scientific article published on 06 February 2020

Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules

scientific article

Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo

scientific article published in February 2003

Multiplicity of 5' cap structures present on short RNAs

scientific article

NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements

scientific article

NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes

scientific article

Population transcriptomics with single-cell resolution: a new field made possible by microfluidics: a technology for high throughput transcript counting and data-driven definition of cell types

scientific article

Promoter architecture of mouse olfactory receptor genes

scientific journal article

RACE: New Applications of an Old Method to Connect Exons

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

scientific article published on 24 February 2020

SCPortalen: human and mouse single-cell centric database

scientific article published on 17 October 2017

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching

scientific article published on 24 November 2012

Targeted reduction of highly abundant transcripts with pseudo-random primers

The complexity of the mammalian transcriptome

scientific article published on 20 July 2006

The cosmopolitan appendicularian Oikopleura dioica reveals hidden genetic diversity around the globe

scientific article published in 2022

The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance

scientific article

The regulated retrotransposon transcriptome of mammalian cells

scientific article (publication date: May 2009)

The transcriptional landscape of the mammalian genome

scientific article

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Transcriptome profiling of hiPSC-derived LSECs with nanoCAGE

scientific article published on 28 January 2020

Tunable fractionation of nucleic acids

scientific article

Two independent transcription initiation codes overlap on vertebrate core promoters

scientific article published on 16 February 2014

Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells

scientific article

Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages

scientific article published on 22 October 2020

Widespread use of the "ascidian" mitochondrial genetic code in tunicates

scientific article published on 10 December 2019

clonotypeR--high throughput analysis of T cell antigen receptor sequences

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