List of works - Dirar Homouz

Accurate Prediction of Preheat Temperature in Solar Flash Desalination Systems Using Kernel Ridge Regression

Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics

scientific article published on 01 May 2024

Analyzing a co-occurrence gene-interaction network to identify disease-gene association

article

Constructing Genetic Networks using Biomedical Literature and Rare Event Classification.

scientific article published on 17 November 2017

Correcting positional correlations in Affymetrix® genome chips

scientific article

Critical phenomena in the temperature-pressure-crowding phase diagram of a protein

scientific article published on 01 October 2019

Crowded, cell-like environment induces shape changes in aspherical protein

scientific article

Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico

scientific article published on 23 April 2019

Effect of device, size, activation energy, temperature, and frequency on memristor switching time

Embedded memory design using memristor: Retention time versus write energy

GRank: a middleware search engine for ranking genes by relevance to given genes

scientific article

How Hydrodynamic Interactions affect the Folding Rate of Proteins

Hybrid Memristor-CMOS memory cell: Modeling and design

Hydrophobic interactions of hexane in nanosized water droplets

scientific article published in September 2009

Impact of hydrodynamic interactions on protein folding rates depends on temperature

Inferring Gene Regulatory Networks from RNA-seq Data Using Kernel Classification ⬇️

scientific article published on 29 March 2023

Kernel ridge regression using truncated newton method

article published in 2014

Macromolecular Crowding Effects on Pressure-Induced Protein Folding/Unfolding

scholarly article by Andrei G. Gasic et al published February 2017 in Biophysical Journal

Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin

scientific article published on January 2009

Mathematical modeling of a memristor device

article

Maximum parsimony interpretation of chromatin capture experiments

scientific article published on 25 November 2019

Memristor: Modeling read and write operations

Memristors for digital, memory and neuromorphic circuits

Memristors-based NMOS logic circuits

Modeling Valance Change Memristor Device: Oxide Thickness, Material Type, and Temperature Effects

Modeling and Optimization of Memristor and STT-RAM-Based Memory for Low-Power Applications

article published in 2016

Modeling and device parameter design to improve reset time in binary-oxide memristors

Modulation of calmodulin plasticity by the effect of macromolecular crowding

scientific article published on 3 July 2009

Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA Polymerase β's activity

scientific article published on 7 November 2017

Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA polymerase β activity

scientific article published on 14 August 2018

Multi-Scale Simulations of Proteins in Different Solvent Conditions

Multiscale Simulation on a Light-Harvesting Molecular Triad

scientific article published on 06 March 2012

Multiscale investigation of chemical interference in proteins

scientific article published in May 2010

Numerical and Finite Element Simulations of Nanotips for FIM/FEM

Physics model of memristor devices with varying active materials

Protein Recognition and Selection through Conformational and Mutually Induced Fit

Protein recognition and selection through conformational and mutually induced fit.

scientific article published on 02 December 2013

Residue Specific Analysis of Frustration in Folding Landscape of Repeat Alpha/Beta Protein Apoflavodoxin

Residue-specific analysis of frustration in the folding landscape of repeat beta/alpha protein apoflavodoxin

scientific article published on 12 November 2009

Robust Hybrid Memristor-CMOS Memory: Modeling and Design

Scaal: A Robust, Accurate, And High-efficient All-atomistic Protein Reconstruction Method From Low-resolution Protein Models

Simulating protein folding in different environmental conditions

scientific article published on January 2014

Structure, Function and Folding of Phosphoglycerate Kinase are Strongly Perturbed by Macromolecular Crowding

scholarly article by Antonios Samiotakis et al published February 2011 in Biophysical Journal

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

scientific article

Subthreshold Continuum Conductance Change in NbO Pt Memristor Interfaces

The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes

scientific article

The Combined Effect of Macromolecular Crowding and Chemical Interference on the Dynamics of Apoazurin Folding

article

The peculiar size and temperature dependence of water diffusion in carbon nanotubes studied with 2D NMR diffusion-relaxation D -T 2eff spectroscopy

scientific article published on 01 May 2020

List of works by Dirar Homouz

Accurate Prediction of Preheat Temperature in Solar Flash Desalination Systems Using Kernel Ridge Regression

Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics

Analyzing a co-occurrence gene-interaction network to identify disease-gene association

Constructing Genetic Networks using Biomedical Literature and Rare Event Classification.

Correcting positional correlations in Affymetrix® genome chips

Critical phenomena in the temperature-pressure-crowding phase diagram of a protein

Crowded, cell-like environment induces shape changes in aspherical protein

Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico

Effect of device, size, activation energy, temperature, and frequency on memristor switching time

Embedded memory design using memristor: Retention time versus write energy

GRank: a middleware search engine for ranking genes by relevance to given genes

How Hydrodynamic Interactions affect the Folding Rate of Proteins

Hybrid Memristor-CMOS memory cell: Modeling and design

Hydrophobic interactions of hexane in nanosized water droplets

Impact of hydrodynamic interactions on protein folding rates depends on temperature

Inferring Gene Regulatory Networks from RNA-seq Data Using Kernel Classification ⬇️

Kernel ridge regression using truncated newton method

Macromolecular Crowding Effects on Pressure-Induced Protein Folding/Unfolding

Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin

Mathematical modeling of a memristor device

Maximum parsimony interpretation of chromatin capture experiments

Memristor: Modeling read and write operations

Memristors for digital, memory and neuromorphic circuits

Memristors-based NMOS logic circuits

Modeling Valance Change Memristor Device: Oxide Thickness, Material Type, and Temperature Effects

Modeling and Optimization of Memristor and STT-RAM-Based Memory for Low-Power Applications

Modeling and device parameter design to improve reset time in binary-oxide memristors

Modulation of calmodulin plasticity by the effect of macromolecular crowding

Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA Polymerase β's activity

Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA polymerase β activity

Multi-Scale Simulations of Proteins in Different Solvent Conditions

Multiscale Simulation on a Light-Harvesting Molecular Triad

Multiscale investigation of chemical interference in proteins

Numerical and Finite Element Simulations of Nanotips for FIM/FEM

Physics model of memristor devices with varying active materials

Protein Recognition and Selection through Conformational and Mutually Induced Fit

Protein recognition and selection through conformational and mutually induced fit.

Residue Specific Analysis of Frustration in Folding Landscape of Repeat Alpha/Beta Protein Apoflavodoxin

Residue-specific analysis of frustration in the folding landscape of repeat beta/alpha protein apoflavodoxin

Robust Hybrid Memristor-CMOS Memory: Modeling and Design

Scaal: A Robust, Accurate, And High-efficient All-atomistic Protein Reconstruction Method From Low-resolution Protein Models

Simulating protein folding in different environmental conditions

Structure, Function and Folding of Phosphoglycerate Kinase are Strongly Perturbed by Macromolecular Crowding

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

Subthreshold Continuum Conductance Change in NbO Pt Memristor Interfaces

The 3D organization of the yeast genome correlates with co-expression and reflects functional relations between genes

The Combined Effect of Macromolecular Crowding and Chemical Interference on the Dynamics of Apoazurin Folding

The peculiar size and temperature dependence of water diffusion in carbon nanotubes studied with 2D NMR diffusion-relaxation D -T 2eff spectroscopy

Water inside carbon nanotubes: structure and dynamics