List of works - Martin Mann

Atom Mapping with Constraint Programming

Atom mapping with constraint programming

scientific article published on 29 November 2014

CPSP-tools--exact and complete algorithms for high-throughput 3D lattice protein studies

scientific article

Comparative genomics boosts target prediction for bacterial small RNAs

scientific article

Evolution of metabolic networks: a computational frame-work

article

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

scientific article published in July 2018

GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence.

scientific article published on 17 April 2018

Integration of accessibility data from structure probing into RNA-RNA interaction prediction

scientific article published on 01 August 2019

Interactive implementations of thermodynamics-based RNA structure and RNA-RNA interaction prediction approaches for example-driven teaching

scientific article published on 30 August 2018

Memory-efficient RNA energy landscape exploration ⬇️

scientific article

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

scientific article published on 27 November 2021

Producing high-accuracy lattice models from protein atomic coordinates including side chains

scientific article

ShaKer: RNA SHAPE prediction using graph kernel

scientific article published on 01 July 2019

Signatures of co-translational folding

scientific article

Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands

scientific article published on 09 July 2021

The Graph Grammar Library - A Generic Framework for Chemical Graph Rewrite Systems

article

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

scientific article published on 13 January 2020

pourRNA-a time- and memory-efficient approach for the guided exploration of RNA energy landscapes

scientific article published on 01 January 2020

List of works by Martin Mann

Atom Mapping with Constraint Programming

Atom mapping with constraint programming

CPSP-tools--exact and complete algorithms for high-throughput 3D lattice protein studies

Comparative genomics boosts target prediction for bacterial small RNAs

Evolution of metabolic networks: a computational frame-work

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence.

Integration of accessibility data from structure probing into RNA-RNA interaction prediction

Interactive implementations of thermodynamics-based RNA structure and RNA-RNA interaction prediction approaches for example-driven teaching

Memory-efficient RNA energy landscape exploration ⬇️

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

Producing high-accuracy lattice models from protein atomic coordinates including side chains

ShaKer: RNA SHAPE prediction using graph kernel

Signatures of co-translational folding

Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands

The Graph Grammar Library - A Generic Framework for Chemical Graph Rewrite Systems

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

pourRNA-a time- and memory-efficient approach for the guided exploration of RNA energy landscapes