List of works - Ivan Merelli

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

scientific article

A multilevel data integration resource for breast cancer study

scientific article

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.

scientific article

An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back

scientific article published on 30 March 2016

Cloud infrastructures for in silico drug discovery: economic and practical aspects

scientific article published on 10 September 2013

DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes

scientific article published on 09 March 2022

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

scientific article

Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.

scientific article published in September 2010

GoSh: a web-based database for goat and sheep EST sequences

scientific article published on 24 March 2007

Grid-enabled high-throughput in silico screening against influenza A neuraminidase.

scientific article published on December 2006

HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study

scientific article

High-performance computing and big data in omics-based medicine

scientific article

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis

scientific article

Image-based surface matching algorithm oriented to structural biology

scientific article published in July 2011

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

scientific article

Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives

scientific article

Mining the bovine genome with the "Bovine SNP Retriever".

scientific article

Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations ⬇️

scientific article published on December 27, 2012

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

scientific article

Oncogene-induced maladaptive activation of trained immunity in the pathogenesis and treatment of Erdheim-Chester disease

scientific article published in 2021

Ontological Enrichment of the Genes-to-Systems Breast Cancer Database

article

Ontology-based resources for bioinformatics analysis

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

scientific article

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs

scientific article published on 29 June 2009

Parallel solutions for voxel-based simulations of reaction-diffusion systems

scientific article

Representation and modeling of protein surface determinants

scientific article published in December 2005

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS ⬇️

scientific article published on January 14, 2013

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.

scientific article

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes ⬇️

scientific article published on January 28, 2013

Static and dynamic interactions between GALK enzyme and known inhibitors: Guidelines to design new drugs for galactosemic patients ⬇️

scientific article published on February 27, 2013

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii

The cell cycle DB: a systems biology approach to cell cycle analysis

scientific article published on 26 December 2007

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

scientific article

Virtual screening pipeline and ligand modelling for H5N1 neuraminidase.

scientific article published on 14 April 2009

myMIR: a genome-wide microRNA targets identification and annotation tool

article

List of works by Ivan Merelli

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

A multilevel data integration resource for breast cancer study

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.

An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back

Cloud infrastructures for in silico drug discovery: economic and practical aspects

DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.

GoSh: a web-based database for goat and sheep EST sequences

Grid-enabled high-throughput in silico screening against influenza A neuraminidase.

HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study

High-performance computing and big data in omics-based medicine

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis

Image-based surface matching algorithm oriented to structural biology

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives

Mining the bovine genome with the "Bovine SNP Retriever".

Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations ⬇️

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

Oncogene-induced maladaptive activation of trained immunity in the pathogenesis and treatment of Erdheim-Chester disease

Ontological Enrichment of the Genes-to-Systems Breast Cancer Database

Ontology-based resources for bioinformatics analysis

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs

Parallel solutions for voxel-based simulations of reaction-diffusion systems

Representation and modeling of protein surface determinants

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS ⬇️

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes ⬇️

Static and dynamic interactions between GALK enzyme and known inhibitors: Guidelines to design new drugs for galactosemic patients ⬇️

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii

The cell cycle DB: a systems biology approach to cell cycle analysis

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

Virtual screening pipeline and ligand modelling for H5N1 neuraminidase.

myMIR: a genome-wide microRNA targets identification and annotation tool