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List of works by Jun Kikuchi

18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific

scientific article published on 09 March 2021

A NMR-based, non-targeted multistep metabolic profiling revealed L-rhamnitol as a metabolite that characterised apples from different geographic origins

scientific article published on 8 November 2014

A light-harvesting antenna protein retains its folded conformation in the absence of protein-lipid and protein-pigment interactions

scientific article published on 01 April 1999

A survey of metabolic changes in potato leaves by NMR-based metabolic profiling in relation to resistance to late blight disease under field conditions

scientific article published on 6 September 2016

A unique unnatural base pair between a C analogue, pseudoisocytosine, and an A analogue, 6-methoxypurine, in replication

scientific article

Accumulation and retention of radioactive elements in biofilm communities surrounding the accident site of the Fukushima Daiichi Nuclear Power Plant

article

An advantage for use of isotope labeling and NMR chemical shifts to analyze the structure of four homologous IgG-binding domains of staphylococcal protein A

scientific article published on 01 January 2000

Application of 1H NMR chemical shifts to measure the quality of protein structures

Application of 1H NMR chemical shifts to measure the quality of protein structures

scientific article published on 01 April 1995

Application of Market Basket Analysis for the Visualization of Transaction Data Based on Human Lifestyle and Spectroscopic Measurements

scientific article

Application of Two-Dimensional Nuclear Magnetic Resonance for Signal Enhancement by Spectral Integration Using a Large Data Set of Metabolic Mixtures

scientific article

Application of a deep neural network to metabolomics studies and its performance in determining important variables

scientific article

Application of ensemble deep neural network to metabolomics studies

scholarly article by Taiga Asakura et al published 11 December 2018 in Analytica Chimica Acta

Application of kernel principal component analysis and computational machine learning to exploration of metabolites strongly associated with diet

scientific article published on 21 February 2018

Artificial Autopolyploidization Modifies the Tricarboxylic Acid Cycle and GABA Shunt in Arabidopsis thaliana Col-0.

scientific article published on 23 May 2016

Bacterial Substrate Transformation Tracked by Stable-Isotope-Guided NMR Metabolomics: Application in a Natural Aquatic Microbial Community

scientific article published on 19 October 2017

Bifidobacteria can protect from enteropathogenic infection through production of acetate ⬇️

scientific article (publication date: 27 January 2011)

Biogeochemical typing of paddy field by a data-driven approach revealing sub-systems within a complex environment--a pipeline to filtrate, organize and frame massive dataset from multi-omics analyses

scientific article

CHAPTER 17. Polysaccharides as Major Carbon Sources in Environmental Biodiversity

Cannibalism Affects Core Metabolic Processes in Helicoverpa armigera Larvae-A 2D NMR Metabolomics Study.

scientific article

Cellulose digestion and metabolism induced biocatalytic transitions in anaerobic microbial ecosystems

scientific article published on 31 December 2013

Changes in Lignin and Polysaccharide Components in 13 Cultivars of Rice Straw following Dilute Acid Pretreatment as Studied by Solution-State 2D 1H-13C NMR.

scientific article published on 17 June 2015

Characterization of lignocellulose of Erianthus arundinaceus in relation to enzymatic saccharification efficiency

Chemical profiling of Jatropha tissues under different torrefaction conditions: application to biomass waste recovery

scientific article

Chemical profiling of complex biochemical mixtures from various seaweeds

article by Yasuhiro Date et al published 13 June 2012 in Polymer Journal

Cholesterol Doping Induced Enhanced Stability of Bicelles

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

scientific article (publication date: 19 December 2013)

Comparative analysis of chemical and microbial profiles in estuarine sediments sampled from Kanto and Tohoku regions in Japan

scientific article

Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production

scientific article

Comparative metabolomic and ionomic approach for abundant fishes in estuarine environments of Japan

scientific article

Comprehensive signal assignment of 13C-labeled lignocellulose using multidimensional solution NMR and 13C chemical shift comparison with solid-state NMR.

scientific article published on 6 September 2013

Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy

scientific article published on 7 April 2012

Conformations of Synthetic Model Peptides for Plasmodium falciparum Circumsporozoite Protein in Me2SO by 1H NMR and Distance Geometry Calculations

article

Correlation exploration of metabolic and genomic diversity in rice

scientific article

Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases

article

Dietary intervention of mice using an improved Multiple Artificial-gravity Research System (MARS) under artificial 1 g

scientific article published on 08 July 2019

Differences in Cellulosic Supramolecular Structure of Compositionally Similar Rice Straw Affect Biomass Metabolism by Paddy Soil Microbiota

scientific article

Differences in glucose yield of residues from among varieties of rice, wheat, and sorghum after dilute acid pretreatment

scientific article published on 16 June 2017

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

scientific article published on 10 February 2012

Dual biosynthetic pathways to phytosterol via cycloartenol and lanosterol in Arabidopsis

scholarly article

Dynamic omics approach identifies nutrition-mediated microbial interactions.

scientific article published on 20 December 2010

Dynamics of a stochastic non-autonomous phytoplankton–zooplankton system involving toxin-producing phytoplankton and impulsive perturbations

scientific article published in 2023

ECOMICS: a web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach

scientific article

Effect of dielectric properties of solvents on the quality factor for a beyond 900 MHz cryogenic probe model

scientific article

Environmental metabolomics with data science for investigating ecosystem homeostasis

scientific article

Erratum: Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

scientific article published in Nature

Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants

scientific article published in 2022

Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping

scientific article

Evaluation of a semipolar solvent system as a step toward heteronuclear multidimensional NMR-based metabolomics for 13C-labeled bacteria, plants, and animals

scientific article published on 5 January 2011

Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals.

scientific article

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization.

scientific article published in December 2017

Exploring the conformational space of amorphous cellulose using NMR chemical shifts

article by Tetsuya Mori et al published October 2012 in Carbohydrate Polymers

FoodPro: A Web-Based Tool for Evaluating Covariance and Correlation NMR Spectra Associated with Food Processes

scientific article published on 19 October 2016

Fragment Assembly Approach Based on Graph/Network Theory with Quantum Chemistry Verifications for Assigning Multidimensional NMR Signals in Metabolite Mixtures

scientific article published on 29 January 2016

Hetero-nuclear NMR-based Metabolomics

Human metabolic, mineral, and microbiota fluctuations across daily nutritional intake visualized by a data-driven approach

scientific article

Hydrophilic Double-Network Polymers that Sustain High Mechanical Modulus under 80% Humidity

Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): a Data-Driven Approach across Metabolic Processes

scientific article

Improvement of physical, chemical, and biological properties of aridisol from Botswana by the incorporation of torrefied biomass

scientific article

In vitro evaluation method for screening of candidate prebiotic foods

scientific article published in December 2013

Integrated Multi-Omics Analysis Reveals Differential Effects of Fructo-Oligosaccharides (FOS) Supplementation on the Human Gut Ecosystem

scientific article published in 2022

Integrated analysis of seaweed components during seasonal fluctuation by data mining across heterogeneous chemical measurements with network visualization

scientific article

Integrative measurement analysis via machine learning descriptor selection for investigating physical properties of biopolymers in hairs

scientific article published on 21 December 2021

InterSpin: Integrated Supportive Webtools for Low- and High-Field NMR Analyses Toward Molecular Complexity

scientific article published on 14 February 2019

Intestinal microbiota composition is altered according to nutritional biorhythms in the leopard coral grouper (Plectropomus leopardus).

scientific article

Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.

scientific article published on 8 January 2015

Large-Scale Evaluation of Major Soluble Macromolecular Components of Fish Muscle from a Conventional 1H-NMR Spectral Database

scientific article published on 23 April 2020

Large-scale omics dataset of polymer degradation provides robust interpretation for microbial niche and succession on different plastisphere

scientific article published in 2023

Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases

scientific article

Metabolic dynamics analysis by massive data integration: application to tsunami-affected field soils in Japan

scientific article

Metabolic movement upon abscisic acid and salicylic acid combined treatments

Metabolic sequences of anaerobic fermentation on glucose-based feeding substrates based on correlation analyses of microbial and metabolite profiling

scientific article published on 13 November 2012

Metabolomic profiling of 13C-labelled cellulose digestion in a lower termite: insights into gut symbiont function

scientific article published in August 2014

Methylated Cytokinins from the Phytopathogen Rhodococcus fascians Mimic Plant Hormone Activity

scientific article

Modification of plant cell wall structure accompanied by enhancement of saccharification efficiency using a chemical, lasalocid sodium

scientific article (publication date: 3 October 2016)

Multi-Spectroscopic Analysis of Seed Quality and 13C-Stable-Iotopologue Monitoring in Initial Growth Metabolism of Jatropha curcas L.

scientific article

Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield

scientific article published on 08 June 2020

Multidimensional High-Resolution Magic Angle Spinning and Solution-State NMR Characterization of (13)C-labeled Plant Metabolites and Lignocellulose

scientific article published on 6 July 2015

Multiple omics uncovers host-gut microbial mutualism during prebiotic fructooligosaccharide supplementation

scientific article

NMR window of molecular complexity showing homeostasis in superorganisms.

scientific article published on 24 October 2017

NMR-Based Metabolic Profiling of Field-Grown Leaves from Sugar Beet Plants Harbouring Different Levels of Resistance to Cercospora Leaf Spot Disease

scientific article published on 26 January 2017

New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies

scientific article published on 27 January 2010

Noninvasive analysis of metabolic changes following nutrient input into diverse fish species, as investigated by metabolic and microbial profiling approaches

scientific article

Oral Administration of Porphyromonas gingivalis Alters the Gut Microbiome and Serum Metabolome

scientific article published on 17 October 2018

Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol

scientific article

Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain

scientific article (publication date: March 2003)

Precipitate obtained following membrane separation of hydrothermally pretreated rice straw liquid revealed by 2D NMR to have high lignin content.

scientific article published on 18 June 2015

Present Status of 920 MHz High-Resolution NMR Spectrometers

Pretreatment and integrated analysis of spectral data reveal seaweed similarities based on chemical diversity

scientific article

Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community

scientific article

Profiling contents of water-soluble metabolites and mineral nutrients to evaluate the effects of pesticides and organic and chemical fertilizers on tomato fruit quality

scientific article

Profiling physicochemical and planktonic features from discretely/continuously sampled surface water

Profiling planktonic biomass using element-specific, multicomponent nuclear magnetic resonance spectroscopy

scientific article

Profiling polar and semipolar plant metabolites throughout extraction processes using a combined solution-state and high-resolution magic angle spinning NMR approach

scientific article published in March 2010

Protonema of the moss Funaria hygrometrica can function as a lead (Pb) adsorbent

scientific article

Rapid discrimination of strain-dependent fermentation characteristics among Lactobacillus strains by NMR-based metabolomics of fermented vegetable juice.

scientific article published on 31 July 2017

Recognition of guanine-guanine mismatches by the dimeric form of 2-amino-1,8-naphthyridine

scientific article published in December 2001

Redox-dependent domain rearrangement of protein disulfide isomerase coupled with exposure of its substrate-binding hydrophobic surface

scientific article

Regional feature extraction of various fishes based on chemical and microbial variable selection using machine learning

scholarly article by Taiga Asakura et al published 2018 in Analytical Methods

SENSI: signal enhancement by spectral integration for the analysis of metabolic mixtures

article

Screening of fungi for decomposition of lignin-derived products from Japanese cedar

scientific article published on 28 May 2018

Selective Signal Detection in Solid-State NMR Using Rotor-Synchronized Dipolar Dephasing for the Analysis of Hemicellulose in Lignocellulosic Biomass

article

Signal Deconvolution and Noise Factor Analysis Based on a Combination of Time-Frequency Analysis and Probabilistic Sparse Matrix Factorization

scientific article published on 23 April 2020

Solid-, solution-, and gas-state NMR monitoring of ¹³C-cellulose degradation in an anaerobic microbial ecosystem.

scientific article published on 29 July 2013

Solubilization mechanism and characterization of the structural change of bacterial cellulose in regenerated states through ionic liquid treatment

scientific article published on 18 April 2012

Solution structure of the DFF-C domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation

scientific article

Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: a novel photocycle involving flavin stacking with an aromatic amino acid

scientific article

Spectroscopic investigation of tissue-specific biomass profiling for Jatropha curcas L

article

SpinCouple: Development of a Web Tool for Analyzing Metabolite Mixtures via Two-Dimensional J-Resolved NMR Database

article

Stable isotope labeling of Arabidopsis thaliana for an NMR-based metabolomics approach

scientific article

Statistical Indices for Simultaneous Large-Scale Metabolite Detections for a Single NMR Spectrum

article by Eisuke Chikayama et al published March 2010 in Analytical Chemistry

Statistical approach for solid-state NMR spectra of cellulose derived from a series of variable parameters

Strengthening of the intestinal epithelial tight junction by Bifidobacterium bifidum

scientific article

Structural and functional characterization of a mutant of Pseudocerastes persicus natriuretic peptide.

scientific article

Structure and Metabolic-Flow Analysis of Molecular Complexity in a (13) C-Labeled Tree by 2D and 3D NMR.

scientific article published on 6 April 2016

Structure and Metabolic-Flow Analysis of Molecular Complexity in a 13 C-Labeled Tree by 2D and 3D NMR

Structure and dynamics of photosynthetic membrane-bound proteins in Rhodobacter Sphaeroides, studied with solid-state NMR spectroscopy

scientific article published on 01 January 2000

Systematic NMR analysis of stable isotope labeled metabolite mixtures in plant and animal systems: coarse grained views of metabolic pathways

scientific article

Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem

scientific article published on 22 February 2018

TBL10 is required for O-acetylation of pectic rhamnogalacturonan-I in Arabidopsis thaliana

scientific article published on 28 September 2018

The Effect of Molecular Conformation on the Accuracy of Theoretical (1)H and (13)C Chemical Shifts Calculated by Ab Initio Methods for Metabolic Mixture Analysis.

scientific article published on 10 March 2016

The circadian clock modulates water dynamics and aquaporin expression in Arabidopsis roots

scientific article

The exposome paradigm to predict environmental health in terms of systemic homeostasis and resource balance based on NMR data science

scientific article published in 2021

Thermal Analyses of Phospholipid Mixtures by Differential Scanning Calorimetry and Effect of Doping with a Bolaform Amphiphile

Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants

scientific article published on 27 April 2007

Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses

scientific article

Toward the complete utilization of rice straw: Methane fermentation and lignin recovery by a combinational process involving mechanical milling, supporting material and nanofiltration

scientific article published on 11 June 2016

Towards dynamic metabolic network measurements by multi-dimensional NMR-based fluxomics

Trans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus).

scientific article published on 24 August 2017

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

scientific article

Tuning water-use efficiency and drought tolerance in wheat using abscisic acid receptors

scientific article published on 08 February 2019

Use of 13C conformation-dependent chemical shifts to elucidate the local structure of a large protein with homologous domains in solution and solid state

scientific article published on 01 February 1999

Visualization of Microfloral Metabolism for Marine Waste Recycling

scientific article

Visualizing microbial dechlorination processes in underground ecosystem by statistical correlation and network analysis approach

scientific article published in October 2013

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