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List of works by Zhongtang Yu

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Improved extraction of PCR-quality community DNA from digesta and fecal samples

scientific article
Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis.

scientific article published on August 2004
Status of the phylogenetic diversity census of ruminal microbiomes.

scientific article
Intestinal microbiome of poultry and its interaction with host and diet

scientific article
Bacterial census of poultry intestinal microbiome.

scientific article published on March 2013
Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.

scientific article
Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR.

scientific article published in December 2004
A meta-analysis of the microbial diversity observed in anaerobic digesters

scientific article published on December 3, 2010
Exposure to a social stressor disrupts the community structure of the colonic mucosa-associated microbiota.

scientific article
Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolides-lincosamides-streptogramin B in livestock manure and manure management systems

scientific article
Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance.

scientific article
Evaluations of different hypervariable regions of archaeal 16S rRNA genes in profiling of methanogens by Archaea-specific PCR and denaturing gradient gel electrophoresis.

scientific article
Degradation of polycyclic aromatic hydrocarbons at low temperature under aerobic and nitrate-reducing conditions in enrichment cultures from northern soils

scientific article
Gut dysbiosis impairs recovery after spinal cord injury.

scientific article published on 17 October 2016
Effects of essential oils on methane production and fermentation by, and abundance and diversity of, rumen microbial populations.

scientific article
Interrelations between the microbiotas in the litter and in the intestines of commercial broiler chickens.

scientific article
Effects of methanogenic inhibitors on methane production and abundances of methanogens and cellulolytic bacteria in in vitro ruminal cultures

scientific article
Ruminal nitrogen metabolism: perspectives for integration of microbiology and nutrition for dairy.

scientific article published on June 2007
Electricity generation from cellulose by rumen microorganisms in microbial fuel cells.

scientific article published in August 2007
Bacterial diversity and community structure in an aerated lagoon revealed by ribosomal intergenic spacer analyses and 16S ribosomal DNA sequencing

scientific article
Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows.

scientific article
Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances

scientific article (publication date: 2017)
The structures of the colonic mucosa-associated and luminal microbial communities are distinct and differentially affected by a prolonged murine stressor

scientific article published on January 2014
Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules, unique to Ruminococcus albus

scientific article published on 17 October 2008
Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities.

scientific article published in February 2004
Occurrence and persistence of erythromycin resistance genes (erm) and tetracycline resistance genes (tet) in waste treatment systems on swine farms.

scientific article published on 6 February 2010
Combinations of nitrate, saponin, and sulfate additively reduce methane production by rumen cultures in vitro while not adversely affecting feed digestion, fermentation or microbial communities

scientific article published on 31 December 2013
An efficient RNA extraction method for estimating gut microbial diversity by polymerase chain reaction

scientific article published on 22 January 2009
Intestinal Microbiota of Broiler Chickens As Affected by Litter Management Regimens.

scientific article published on 18 May 2016
Effects of vanillin, quillaja saponin, and essential oils on in vitro fermentation and protein-degrading microorganisms of the rumen

scientific article published on April 30, 2013
Variations in 16S rRNA-based microbiome profiling between pyrosequencing runs and between pyrosequencing facilities.

scientific article
Populations of select cultured and uncultured bacteria in the rumen of sheep and the effect of diets and ruminal fractions

scientific article
Persistence of resistance to erythromycin and tetracycline in swine manure during simulated composting and lagoon treatments.

scientific article
Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments

scientific article published on September 8, 2011
Novel glycoside hydrolases identified by screening a Chinese Holstein dairy cow rumen-derived metagenome library

scientific article
Selected antimicrobial resistance during composting of manure from cattle administered sub-therapeutic antimicrobials

scientific article published on 6 February 2009
Effective reduction of enteric methane production by a combination of nitrate and saponin without adverse effect on feed degradability, fermentation, or bacterial and archaeal communities of the rumen.

scientific article
Stability of the bacterial community in a pulp mill effluent treatment system during normal operation and a system shutdown.

scientific article
Effects of nitrate on methane production, fermentation, and microbial populations in in vitro ruminal cultures

scientific article published on 10 October 2011
Shifts in microbial community structure of granular and liquid biomass in response to changes to infeed and digester design in anaerobic digesters receiving food-processing wastes.

scientific article
Critical evaluation of essential oils as rumen modifiers in ruminant nutrition: A review.

scientific article
RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition

scientific article
Spatial and temporal variations of microbial community in a mixed plug-flow loop reactor fed with dairy manure

scientific article
Monitoring the Size and Metabolic Activity of the Bacterial Community during Biostimulation of Fuel-Contaminated Soil using Competitive PCR and RT-PCR.

scientific article published in October 2001
Essential oils affect populations of some rumen bacteria in vitro as revealed by microarray (RumenBactArray) analysis.

scientific article
Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin.

scientific article published on 9 May 2008
Reactor performance and microbial community dynamics during solid-state anaerobic digestion of corn stover at mesophilic and thermophilic conditions

scientific article published on March 5, 2013
Recent advances in understanding resin acid biodegradation: microbial diversity and metabolism

scientific article (publication date: September 1999)
Bioaugmentation with resin-acid-degrading bacteria enhances resin acid removal in sequencing batch reactors treating pulp mill effluents

scientific article
Estrogen status alters tissue distribution and metabolism of selenium in female rats.

scientific article

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