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List of works by Masafumi Yohda

A novel chiral thiol reagent for automated precolumn derivatization and high-performance liquid chromatographic enantioseparation of amino acids and its application to the aspartate racemase assay ⬇️

scientific article published on April 15, 2003

A novel method for direct electrochemistry of a thermoacidophilic cytochrome P450

article by Hirotoshi Matsumura et al published August 2006 in Electrochemistry Communications

A novel vector for positive selection of inserts harboring an open reading frame by translational coupling.

scientific article

A zeolite as a tool for successful refolding of PEGylated proteins and their reassembly with tertiary structures

scientific article published on 03 June 2019

ATP binding is critical for the conformational change from an open to closed state in archaeal group II chaperonin.

scientific article published on 14 August 2003

ATP dependent rotational motion of group II chaperonin observed by X-ray single molecule tracking

scientific article

Adaptation of a hyperthermophilic group II chaperonin to relatively moderate temperatures.

scientific article published on 19 February 2010

Affinity purification of fusion chaperonin Cpn60-(His)(6) from thermophilic bacterium Bacillus strain MS and its use in facilitating protein refolding and preventing heat denaturation

scientific article published in May 2000

An enzyme controlled by light: the molecular mechanism of photoreactivity in nitrile hydratase

scientific article published on 01 June 1999

An improved bioluminescence-based signaling assay for odor sensing with a yeast expressing a chimeric olfactory receptor

scientific article published on 04 July 2012

Analysis of the interaction mode between hyperthermophilic archaeal group II chaperonin and prefoldin using a platform of chaperonin oligomers of various subunit arrangements

scientific article published on 06 May 2010

Archaeal group II chaperonin mediates protein folding in the cis-cavity without a detachable GroES-like co-chaperonin

scientific article published in January 2002

Arginine 56 mutation in the beta subunit of nitrile hydratase: importance of hydrogen bonding to the non-heme iron center

scientific article published on 01 July 2000

Asymmetry in the function and dynamics of the cytosolic group II chaperonin CCT/TRiC

scientific article

Automated single nucleotide polymorphism typing using bead array in capillary tube

scientific article published on 12 June 2010

Biophysical characterization of highly active recombinant Gaussia luciferase expressed in Escherichia coli

scientific article published on 07 May 2010

Bridging human chaperonopathies and microbial chaperonins

scientific article published on 15 March 2019

Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes

scientific article

Catalytic Mechanism of Nitrile Hydratase Proposed by Time-resolved X-ray Crystallography Using a Novel Substrate, tert-Butylisonitrile

scientific article

Chaperonin-mediated stabilization and ATP-triggered release of semiconductor nanoparticles

scientific article

Characterization of a sHsp of Schizosaccharomyces pombe, SpHsp15.8, and the implication of its functional mechanism by comparison with another sHsp, SpHsp16.0.

scientific article published in January 2009

Characterization of group II chaperonins from an acidothermophilic archaeon Picrophilus torridus

scientific article published on 14 June 2016

Cloning and functional characterization of Arabidopsis thaliana D-amino acid aminotransferase--D-aspartate behavior during germination. ⬇️

scientific article published in March 2008

Cobalt-substituted Fe-type nitrile hydratase of Rhodococcus sp. N-771

scientific article published on 01 January 2000

Comparative analysis of the protein folding activities of two chaperonin subunits of Thermococcus strain KS-1: the effects of beryllium fluoride.

scientific article published on 28 October 2006

Computational prediction and experimental characterization of a "size switch type repacking" during the evolution of dengue envelope protein domain III (ED3)

scientific article

Concentration-dependent recruitment of mammalian odorant receptors

scientific article published on 31 January 2020

Construction of a positive selection marker by a lethal gene with the amber stop codon(s) regulator

article

Contribution of the C-Terminal Region of a Group II Chaperonin to its Interaction with Prefoldin and Substrate Transfer.

scientific article

Contribution of the C-terminal region to the thermostability of the archaeal group II chaperonin from Thermococcus sp. strain KS-1.

scientific article published on 10 May 2006

Crystal Structures of the Lumazine Protein from Photobacterium kishitanii in Complexes with the Authentic Chromophore, 6,7-Dimethyl- 8-(1'-D-Ribityl) Lumazine, and Its Analogues, Riboflavin and Flavin Mononucleotide, at High Resolution

scientific article

Crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from the hyperthermophile Thermotoga maritima for insights into the coordination of conformational changes and an inhibitor binding

scientific article

Crystal structure of PH1733, an aspartate racemase homologue, from Pyrococcus horikoshii OT3

scientific article

Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines

scientific article

Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization

scientific article

Crystal structure of chaperonin-60 from Paracoccus denitrificans

scientific article

Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074

scientific article

Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms

scientific article

Crystallization and preliminary X-ray analysis of aspartate racemase from Pyrococcus horikoshii OT3

scientific article published on 25 October 2001

Crystallization and preliminary X-ray characterization of archaeal group II chaperonin α-subunit fromThermococcusstrain KS-1

scientific article published on 28 September 2002

Cyclic RGD peptide-labeled upconversion nanophosphors for tumor cell-targeted imaging.

scientific article published on 8 February 2009

Detection and identification of Dehalococcoides species responsible for in situ dechlorination of trichloroethene to ethene enhanced by hydrogen-releasing compounds

scientific article published in September 2008

Development of a novel method for operating magnetic particles, Magtration Technology, and its use for automating nucleic acid purification

scientific article published on 01 January 2001

Development of an integrated automation system with a magnetic bead-mediated nucleic acid purification device for genetic analysis and gene manipulation.

scientific article published in June 2004

Development of the Handy Bio-Strand and its application to genotyping of OPRM1 (A118G)

scientific article published on 06 May 2007

Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0

scientific article

Dynamics of group II chaperonin and prefoldin probed by 13C NMR spectroscopy

scientific article published on 01 March 2008

Effect of Supporting Electrolytes on the Redox Potential for Thermophilic Cytochrome P450 in Poly (ethylene oxide)-For Utilization as a Catalyst for the Biocathode

Effect of antipsychotic drugs on DISC1 and dysbindin expression in mouse frontal cortex and hippocampus.

scientific article published on 6 February 2006

Expression and characterization of the Plasmodium translocon of the exported proteins component EXP2

scientific article (publication date: 22 January 2017)

Expression, Functional Characterization, and Preliminary Crystallization of the Cochaperone Prefoldin from the Thermophilic Fungus

scientific article published on 19 August 2018

Expression, purification, crystallization and preliminary X-ray crystallographic studies of hepatitis B virus core fusion protein corresponding to octahedral particles

scientific article published on 31 January 2013

Expression, purification, crystallization and preliminary crystallographic analysis of hepatitis B virus core protein dimerized via a peptide linker containing an EGFP insertion.

scientific article published on 27 July 2013

Facilitated release of substrate protein from prefoldin by chaperonin.

scientific article published in July 2005

Fe-type nitrile hydratase.

scientific article

Formation of highly toxic soluble amyloid beta oligomers by the molecular chaperone prefoldin.

scientific article published in December 2008

Formation of non-toxic Aβ fibrils by small heat shock protein under heat-stress conditions

scientific article published on 19 December 2012

Functional Expression and Characterization of Tetrachloroethene Dehalogenase From sp

scientific article published in 2018

Functional and structural characterization of HspB1/Hsp27 from Chinese hamster ovary cells

scientific article published on 04 September 2019

Functional characterization of recombinant prefoldin complexes from a hyperthermophilic archaeon, Thermococcus sp. strain KS-1

scientific article published on 02 February 2008

Functional expression of thiocyanate hydrolase is promoted by its activator protein, P15K.

scientific article

Genome sequence determination and metagenomic characterization of a Dehalococcoides mixed culture grown on cis-1,2-dichloroethene.

scientific article published on 8 January 2015

Glycine at the 65th position plays an essential role in ATP-dependent protein folding by Archael group II chaperonin.

scientific article published in December 2001

Heat-inactivated proteins are rescued by the DnaK.J-GrpE set and ClpB chaperones

scientific article

High resolution crystal structure of dengue-3 envelope protein domain III suggests possible molecular mechanisms for serospecific antibody recognition

scientific article

Hyperthermophilic archaeal prefoldin shows refolding activity at low temperature

scientific article published on 15 November 2009

Improvement of enantioselectivity of the B-type halohydrin hydrogen-halide-lyase from Corynebacterium sp. N-1074

scientific article

Inter-Ring Communication Is Dispensable in the Reaction Cycle of Group II Chaperonins

scientific article published on 21 May 2014

Interaction of a small heat shock protein of the fission yeast, Schizosaccharomyces pombe, with a denatured protein at elevated temperature.

scientific article published on 29 July 2005

Inversion of the anatomical lateralization of chick thalamofugal visual pathway by light experience

scientific article published in February 2002

Isolation of cyanide-degrading bacteria and molecular characterization of its cyanide-degrading nitrilase

scientific article published on 30 December 2020

Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase

scientific article

Kinetics and binding sites for interaction of the prefoldin with a group II chaperonin: contiguous non-native substrate and chaperonin binding sites in the archaeal prefoldin.

scientific article

Localization of prefoldin interaction sites in the hyperthermophilic group II chaperonin and correlations between binding rate and protein transfer rate.

scientific article published on 5 September 2006

MagSNiPer: A new single nucleotide polymorphism typing method based on single base extension, magnetic separation, and chemiluminescence

scientific article published on 01 June 2005

Modulation of redox potential and alteration in reactivity via the peroxide shunt pathway by mutation of cytochrome P450 around the proximal heme ligand

scientific article published on 26 March 2008

Molecular chaperone prefoldin-assisted biosynthesis of gold nanoparticles with improved size distribution and dispersion

scientific article published in April 2019

Monooxygenation by a thermophilic cytochrome P450 via direct electron donation from NADH.

scientific article published on 28 February 2011

Multiple Myeloma-Associated Ig Light Chain Crystalline Cast Nephropathy

scientific article published on 03 July 2020

Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771

scientific article published on 01 April 2006

Nonequivalence observed for the 16-meric structure of a small heat shock protein, SpHsp16.0, from Schizosaccharomyces pombe

scientific article

Novel catalytic activity of nitrile hydratase from Rhodococcus sp. N771.

scientific article

Occurrence of D-Amino Acids and a pyridoxal 5'-phosphate-dependent aspartate racemase in the acidothermophilic archaeon, Thermoplasma acidophilum.

scientific article

Overexpression of prefoldin from the hyperthermophilic archaeum Pyrococcus horikoshii OT3 endowed Escherichia coli with organic solvent tolerance

scientific article

PV1 Protein from Plasmodium falciparum Exhibits Chaperone-Like Functions and Cooperates with Hsp100s

scientific article published on 16 November 2020

Packaging guest proteins into the encapsulin nanocompartment from Rhodococcus erythropolis N771.

scientific article

Preparation of Thermus thermophilus holo-chaperonin-immobilized microspheres with high ability to facilitate protein refolding

scientific article published on 01 April 2000

Pretreatment of polyamide monofilament with hydrochloric acid improves sensitivity of three-dimensional microarray, Bio-Strand

scientific article published on 01 November 2006

Properties and Crystal Structure of Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8

scientific article

Purification and characterization of proteins in multifloral honey from kelulut bee (stingless bee)

scientific article published on 16 November 2019

Quantification and improvement of error rate during ligase detection reaction.

scientific article published on 20 August 2009

Quantitative discrimination of 16 S rRNA genes of Dehalococcoides species by MagSNiPer, a quantitative single-nucleotide-polymorphism genotyping method.

scientific article

Rapid multiplex single nucleotide polymorphism genotyping based on single base extension reactions and color-coded beads

scientific article published on 01 January 2002

Recent developments in laboratory automation using magnetic particles for genome analysis

scientific article

Role of the IXI/V motif in oligomer assembly and function of StHsp14.0, a small heat shock protein from the acidothermophilic archaeon, Sulfolobus tokodaii strain 7

scientific article published on 01 May 2008

Role of the N-terminal region of the crenarchaeal sHsp, StHsp14.0, in thermal-induced disassembly of the complex and molecular chaperone activity

scientific article published in February 2004

Role of the helical protrusion in the conformational change and molecular chaperone activity of the archaeal group II chaperonin.

scientific article published on 20 February 2004

Roles of conserved basic amino acid residues and activation mechanism of the hyperthermophilic aspartate racemase at high temperature

scientific article published on 01 August 2006

Semi-quantitative discrimination of HBV mutants using allele-specific oligonucleotide hybridization with Handy Bio-Strand.

scientific article published on 18 July 2009

Sequential action of ATP-dependent subunit conformational change and interaction between helical protrusions in the closure of the built-in lid of group II chaperonins

scientific article published on 13 October 2008

Single nucleotide polymorphism genotyping of CYP2C19 using a new automated system

scientific article published on 08 June 2007

Solubilization and folding of a fully active recombinant Gaussia luciferase with native disulfide bonds by using a SEP-Tag

scientific article published on 14 September 2011

Solubilization of heme proteins in low polar solvents by chemical modification on a protein's surface

article

Spectroscopic and Electrochemical Characterization of Cytochrome P450st-DDAB Films on a Plastic-Formed Carbon Electrode

scholarly article by Supranee Wiwatchaiwong et al published March 2007 in Electroanalysis

Spectroscopic characterization of the acid-alkaline transition of a thermophilic cytochrome P450.

scientific article published on 27 November 2012

Split luciferase complementation assay for the analysis of G protein-coupled receptor ligand response in Saccharomyces cerevisiae.

scientific article published on 23 January 2017

StHsp14.0, a small heat shock protein of Sulfolobus tokodaii strain 7, protects denatured proteins from aggregation in the partially dissociated conformation

scientific article published on 09 June 2011

Stability of Thermophilic Cytochrome P450 Modified with Poly(ethylene oxide) in Ionic Liquid

Structural Studies on the Oligomeric Transition of a Small Heat Shock Protein, StHsp14.0 ⬇️

scientific article published on May 18, 2012

Structural and functional characterization of aspartate racemase from the acidothermophilic archaeon Picrophilus torridus

scientific article

Structural and molecular characterization of the prefoldin beta subunit from Thermococcus strain KS-1

scientific article

Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases

scientific article

Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition

scientific article

Structure and direct electrochemistry of cytochrome P450 from the thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.

scientific article

Structure and function of archaeal prefoldin, a co-chaperone of group II chaperonin

scientific article

Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins

scientific article

Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism

scientific article

Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center

scientific article

Structure‐Based Mutational Study of an Archaeal DNA Ligase towards Improvement of Ligation Activity ⬇️

scientific article published on November 6, 2012

Successful PEGylation of hollow encapsulin nanoparticles from Rhodococcus erythropolis N771 without affecting their disassembly and reassembly properties

scientific article

The N-terminal region of RTP1S plays important roles in dimer formation and odorant receptor-trafficking

scientific article published on 08 August 2019

The electrochemical properties of thermophilic cytochrome P450 CYP119A2 at extremely high temperatures in poly(ethylene oxide)

article published in 2007

Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations

scientific article

Thermodynamic characterization of the interaction between prefoldin and group II chaperonin

scientific article

Thiocyanate hydrolase is a cobalt-containing metalloenzyme with a cysteine-sulfinic acid ligand.

scientific article published in January 2006

Three-Dimensional Structures of OSW-1 and Its Congener

scientific article published on 23 November 2010

Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile

scientific article

Topological relation of chick thalamofugal visual projections with hyper pallium revealed by three color tracers

scientific article published in July 2005

Trastuzumab-induced CCL20 and interleukin-8 mRNA in human whole blood ex vivo

scientific article published on 10 February 2009

Two arginine residues in the substrate pocket predominantly control the substrate selectivity of thiocyanate hydrolase

scientific article published in March 2013

Two kinds of archaeal group II chaperonin subunits with different thermostability in Thermococcus strain KS-1

scientific article published on 01 May 2002

Use of Candida rugosa lipase as a biocatalyst for L-lactide ring-opening polymerization and polylactic acid production

Vapor detection and discrimination with a panel of odorant receptors

scientific article published in Nature Communications

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