List of works - Yutaka Nakashimada

Bacterial community structure and predicted alginate metabolic pathway in an alginate-degrading bacterial consortium.

scientific article published on 18 July 2015

Brewer's yeast cell wall affects microbiota composition and decreases Bacteroides fragilis populations in an anaerobic gut intestinal model ⬇️

scientific article published on 06 October 2010

Characterization of a halotolerant acetoclastic methanogen highly enriched from marine sediment and its application in removal of acetate

scientific article published on 27 June 2015

Correction for Iwasaki et al., "Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073".

scientific article

Degradation of chloroanilines by toluene dioxygenase from Pseudomonas putida T57.

scientific article

Degradation of glyoxylate and glycolate with ATP synthesis by a thermophilic anaerobic bacterium, Moorella sp. strain HUC22-1.

scientific article

Desulfotomaculum carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of growth at 100% CO.

scientific article

Development of genetic transformation and heterologous expression system in carboxydotrophic thermophilic acetogen Moorella thermoacetica ⬇️

scientific article published on November 22, 2012

Direct and Indirect Greenhouse Gas Emissions from Vertical Flow Constructed Wetland Planted with Forage Rice

article

Dry anaerobic ammonia-methane production from chicken manure

scientific article published on 31 January 2009

Dry mesophilic fermentation of chicken manure for production of methane by repeated batch culture

scientific article published on 01 March 2009

Dysgonomonas alginatilytica sp. nov., an alginate-degrading bacterium isolated from a microbial consortium

scientific article

Effect of salinity on methanogenic propionate degradation by acclimated marine sediment-derived culture.

scientific article published on 12 September 2015

Efficient aspartic acid production by a psychrophile-based simple biocatalyst.

scientific article published on 8 August 2015

Efficient conversion of mannitol derived from brown seaweed to fructose for fermentation with a thraustochytrid.

scientific article

Engineering of a functional thermostable kanamycin resistance marker for use in Moorella thermoacetica ATCC39073

scientific article published on 15 March 2013

Enhancement of (R)-1,3-butanediol production by engineered Escherichia coli using a bioreactor system with strict regulation of overall oxygen transfer coefficient and pH.

scientific article published on 23 April 2014

Enhancement of methane production from co-digestion of chicken manure with agricultural wastes

scientific article published on 24 February 2014

Evaluation of marine sediments as microbial sources for methane production from brown algae under high salinity.

scientific article published on 8 July 2014

Flocculating property of extracellular polymeric substance derived from a marine photosynthetic bacterium, Rhodovulum sp

scientific article published on 01 January 1999

Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073.

scientific article published on 3 February 2017

Identification and characterization of chemosensors for d-malate, unnatural enantiomer of malate, in Ralstonia pseudosolanacearum.

scientific article

Identification of Pseudomonas fluorescens chemotaxis sensory proteins for malate, succinate, and fumarate, and their involvement in root colonization.

scientific article

Identification of boric acid as a novel chemoattractant and elucidation of its chemoreceptor in Ralstonia pseudosolanacearum Ps29.

scientific article published on 17 August 2017

Identification of chemotaxis sensory proteins for amino acids in Pseudomonas fluorescens Pf0-1 and their involvement in chemotaxis to tomato root exudate and root colonization.

scientific article published on 5 September 2012

Identification of the mcpA and mcpM genes, encoding methyl-accepting proteins involved in amino acid and l-malate chemotaxis, and involvement of McpM-mediated chemotaxis in plant infection by Ralstonia pseudosolanacearum (formerly Ralstonia solanace

scientific article

Improved methane fermentation of chicken manure via ammonia removal by biogas recycle

scientific article published on 08 April 2010

Improved methane production from brown algae under high salinity by fed-batch acclimation.

scientific article

Improved methanization and microbial diversity during batch mode cultivation with repetition of substrate addition using defined organic matter and marine sediment inoculum at seawater salinity.

scientific article

Improvement of (R)-1,3-butanediol production by engineered Escherichia coli.

scientific article published on 4 January 2013

Involvement of many chemotaxis sensors in negative chemotaxis to ethanol in Ralstonia pseudosolanacearum Ps29.

scientific article published on 14 November 2017

Isolation and characterization of bacterium producing lipid from short-chain fatty acids

scientific article published on 23 November 2015

Isolation of High Carotenoid-producing Aurantiochytrium sp. Mutants and Improvement of Astaxanthin Productivity Using Metabolic Information

scientific article published on 09 April 2018

Isolation of thermophilic acetogens and transformation of them with the pyrF and kan(r) genes

scientific article published on 7 February 2013

Membrane reactors for biogas production and processing

article

Negative chemotaxis of Ralstonia pseudosolanacearum to maleate and identification of the maleate chemosensory protein.

scientific article

Nitrogen transformations in vertical flow systems with and without rice (Oryza sativa) studied with a high-resolution soil–water profiler

scientific article published in 2009

Production of 16.5% v/v ethanol from seagrass seeds.

scientific article published on 24 June 2014

RNase H-assisted RNA-primed rolling circle amplification for targeted RNA sequence detection.

scientific article published on 17 May 2018

Semi-continuous methane production from undiluted brown algae using a halophilic marine microbial community

scientific article published on 31 October 2015

Thermophilic ethanol fermentation from lignocellulose hydrolysate by genetically engineered Moorella thermoacetica

scientific article

Thermophilic two-stage dry anaerobic digestion of model garbage with ammonia stripping ⬇️

scientific article published on November 19, 2010

Value-added lipid production from brown seaweed biomass by two-stage fermentation using acetic acid bacterium and thraustochytrid

scientific article published on 3 August 2014

List of works by Yutaka Nakashimada

Bacterial community structure and predicted alginate metabolic pathway in an alginate-degrading bacterial consortium.

Brewer's yeast cell wall affects microbiota composition and decreases Bacteroides fragilis populations in an anaerobic gut intestinal model ⬇️

Characterization of a halotolerant acetoclastic methanogen highly enriched from marine sediment and its application in removal of acetate

Correction for Iwasaki et al., "Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073".

Degradation of chloroanilines by toluene dioxygenase from Pseudomonas putida T57.

Degradation of glyoxylate and glycolate with ATP synthesis by a thermophilic anaerobic bacterium, Moorella sp. strain HUC22-1.

Desulfotomaculum carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of growth at 100% CO.

Development of genetic transformation and heterologous expression system in carboxydotrophic thermophilic acetogen Moorella thermoacetica ⬇️

Direct and Indirect Greenhouse Gas Emissions from Vertical Flow Constructed Wetland Planted with Forage Rice

Dry anaerobic ammonia-methane production from chicken manure

Dry mesophilic fermentation of chicken manure for production of methane by repeated batch culture

Dysgonomonas alginatilytica sp. nov., an alginate-degrading bacterium isolated from a microbial consortium

Effect of salinity on methanogenic propionate degradation by acclimated marine sediment-derived culture.

Efficient aspartic acid production by a psychrophile-based simple biocatalyst.

Efficient conversion of mannitol derived from brown seaweed to fructose for fermentation with a thraustochytrid.

Engineering of a functional thermostable kanamycin resistance marker for use in Moorella thermoacetica ATCC39073

Enhancement of (R)-1,3-butanediol production by engineered Escherichia coli using a bioreactor system with strict regulation of overall oxygen transfer coefficient and pH.

Enhancement of methane production from co-digestion of chicken manure with agricultural wastes

Evaluation of marine sediments as microbial sources for methane production from brown algae under high salinity.

Flocculating property of extracellular polymeric substance derived from a marine photosynthetic bacterium, Rhodovulum sp

Homolactic Acid Fermentation by the Genetically Engineered Thermophilic Homoacetogen Moorella thermoacetica ATCC 39073.

Identification and characterization of chemosensors for d-malate, unnatural enantiomer of malate, in Ralstonia pseudosolanacearum.

Identification of Pseudomonas fluorescens chemotaxis sensory proteins for malate, succinate, and fumarate, and their involvement in root colonization.

Identification of boric acid as a novel chemoattractant and elucidation of its chemoreceptor in Ralstonia pseudosolanacearum Ps29.

Identification of chemotaxis sensory proteins for amino acids in Pseudomonas fluorescens Pf0-1 and their involvement in chemotaxis to tomato root exudate and root colonization.

Identification of the mcpA and mcpM genes, encoding methyl-accepting proteins involved in amino acid and l-malate chemotaxis, and involvement of McpM-mediated chemotaxis in plant infection by Ralstonia pseudosolanacearum (formerly Ralstonia solanace

Improved methane fermentation of chicken manure via ammonia removal by biogas recycle

Improved methane production from brown algae under high salinity by fed-batch acclimation.

Improved methanization and microbial diversity during batch mode cultivation with repetition of substrate addition using defined organic matter and marine sediment inoculum at seawater salinity.

Improvement of (R)-1,3-butanediol production by engineered Escherichia coli.

Involvement of many chemotaxis sensors in negative chemotaxis to ethanol in Ralstonia pseudosolanacearum Ps29.

Isolation and characterization of bacterium producing lipid from short-chain fatty acids

Isolation of High Carotenoid-producing Aurantiochytrium sp. Mutants and Improvement of Astaxanthin Productivity Using Metabolic Information

Isolation of thermophilic acetogens and transformation of them with the pyrF and kan(r) genes

Membrane reactors for biogas production and processing

Negative chemotaxis of Ralstonia pseudosolanacearum to maleate and identification of the maleate chemosensory protein.

Nitrogen transformations in vertical flow systems with and without rice (Oryza sativa) studied with a high-resolution soil–water profiler

Production of 16.5% v/v ethanol from seagrass seeds.

RNase H-assisted RNA-primed rolling circle amplification for targeted RNA sequence detection.

Semi-continuous methane production from undiluted brown algae using a halophilic marine microbial community

Thermophilic ethanol fermentation from lignocellulose hydrolysate by genetically engineered Moorella thermoacetica

Thermophilic two-stage dry anaerobic digestion of model garbage with ammonia stripping ⬇️

Value-added lipid production from brown seaweed biomass by two-stage fermentation using acetic acid bacterium and thraustochytrid