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List of works by Alton B. Farris

A data model and database for high-resolution pathology analytical image informatics ⬇️

scientific article published on July 26, 2011

A pilot trial targeting the ICOS-ICOS-L pathway in nonhuman primate kidney transplantation.

scientific article

Abatacept as rescue immunosuppression after calcineurin inhibitor treatment failure in renal transplantation

scientific article published on 12 March 2019

Acute renal endothelial injury during marrow recovery in a cohort of combined kidney and bone marrow allografts.

scientific article

Adaptive immunity rather than viral cytopathology mediates polyomavirus-associated nephropathy in mice.

scientific article

Alloimmunity But Not Viral Immunity Promotes Allograft Loss in a Mouse Model of Polyomavirus-Associated Allograft Injury.

scientific article published on 12 May 2017

An integrative web-based software tool for multi-dimensional pathology whole-slide image analytics

scientific article published in 2022

Antiangiogenic effects of ganetespib in colorectal cancer mediated through inhibition of HIF-1α and STAT-3.

scientific article published on 10 July 2013

Antibody-Mediated Rejection in Sensitized Nonhuman Primates: Modeling Human Biology.

scientific article published on 24 December 2015

Artificial Intelligence and Algorithmic Computational Pathology: Introduction with Renal Allograft Examples

scientific article published on 19 November 2020

Assessment of a computerized quantitative quality control tool for kidney whole slide image biopsies

scientific article published on 16 November 2020

Association Between Molecular Subtypes of Colorectal Tumors and Patient Survival, Based on Pooled Analysis of 7 International Studies

scientific article published on 20 February 2020

Association between body mass index and mortality for colorectal cancer survivors: overall and by tumor molecular phenotype

scientific article published on 2 June 2015

Autoimmune pancreatitis-related cholecystitis: a morphologically and immunologically distinctive form of lymphoplasmacytic sclerosing cholecystitis

scientific article published on June 2009

Autoimmune pancreatitis-related diabetes: quantitative analysis of endocrine islet cells and inflammatory infiltrate

scientific article published on 15 July 2010

Avoidance of CNI and Steroids Using Belatacept - Results of the Clinical Trials in Organ Transplantation 16 Trial

scientific article published on 18 June 2020

Banff Digital Pathology Working Group: Going Digital in Transplant Pathology

scientific article published on 17 March 2020

Banff Histopathological Consensus Criteria for Preimplantation Kidney Biopsies

scientific article

Banff fibrosis study: multicenter visual assessment and computerized analysis of interstitial fibrosis in kidney biopsies

scientific article published on 20 February 2014

Belatacept and Sirolimus Prolong Nonhuman Primate Renal Allograft Survival Without a Requirement for Memory T Cell Depletion ⬇️

scientific article published on January 11, 2013

Belatacept-Resistant Rejection Is Associated With CD28+ Memory CD8 T Cells.

scientific article published on 14 May 2017

Beyond a broken heart: circulatory dysfunction in the failing Fontan.

scientific article published on 15 February 2014

C/EBP homologous protein modulates liraglutide-mediated attenuation of non-alcoholic steatohepatitis.

scientific article published on 30 May 2016

CD57(+) CD4 T Cells Underlie Belatacept-Resistant Allograft Rejection ⬇️

scientific article published on 25 November 2015

Case records of the Massachusetts General Hospital. Case 21-2009. A 61-year-old woman with abdominal pain, weight loss, and renal failure

scientific article published in July 2009

Cecal ligation and puncture followed by methicillin-resistant Staphylococcus aureus pneumonia increases mortality in mice and blunts production of local and systemic cytokines

scientific article published on January 2012

Chronic alcohol ingestion increases mortality and organ injury in a murine model of septic peritonitis

scientific article

Clinical and pathological analysis of colonic Crohn's disease, including a subgroup with ulcerative colitis-like features

scientific article published on 12 August 2011

Clinically relevant biomarkers to select patients for targeted inhibitor therapy after resection of hepatocellular carcinoma

scientific article published on 18 May 2011

Clinicopathologic Features and Outcome of Young Adults With Stage IV Colorectal Cancer.

scientific article published in December 2015

Clinicopathologic and molecular profiles of microsatellite unstable Barrett Esophagus-associated adenocarcinoma.

scientific article published in May 2011

Comparison of Outcomes between Individuals with Pure and Mixed Lupus Nephritis: A Retrospective Study.

scientific article

Concomitant herpes simplex virus colitis and hepatitis in a man with ulcerative colitis: Case report and review of the literature

scientific article

Correction: Chronic Alcohol Ingestion Increases Mortality and Organ Injury in a Murine Model of Septic Peritonitis

scientific article published on 17 September 2020

Correlation Patterns Among B7 Family Ligands and Tryptophan Degrading Enzymes in Hepatocellular Carcinoma

scientific article published on 03 September 2020

Costimulation blockade alters germinal center responses and prevents antibody-mediated rejection

scientific article published on January 2014

Daratumumab in Sensitized Kidney Transplantation: Potentials and Limitations of Experimental and Clinical Use

scientific article published on 21 June 2019

Decreased Hepatocyte Autophagy Leads to Synergistic IL-1β and TNF Mouse Liver Injury and Inflammation

scientific article published on 28 February 2020

Deep-learning-based accurate hepatic steatosis quantification for histological assessment of liver biopsies

scientific article published on 13 July 2020

Development of CD3 cell quantitation algorithms for renal allograft biopsy rejection assessment utilizing open source image analysis software.

scientific article

Development of focal segmental glomerulosclerosis after anabolic steroid abuse

scientific article

Differential expression and prognostic value of ERCC1 and thymidylate synthase in resected gastric adenocarcinoma

scientific article

Differentiation of lipid-poor adrenal adenomas from non-adenomas with magnetic resonance imaging: Utility of dynamic, contrast enhancement and single-shot T2-weighted sequences.

scientific article published on 23 July 2015

Diffuse cellular and fibrosing interstitial pneumonitis with desquamative interstitial pneumonitis-like features associated with myeloid neoplasia

scientific article published on 01 October 2009

Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all o

scientific article

Dual Inhibition of MEK and PI3K/Akt Rescues Cancer Cachexia through both Tumor-Extrinsic and -Intrinsic Activities

scientific article published on 3 November 2016

Dual islet transplantation modeling of the instant blood-mediated inflammatory reaction.

scientific article

Dual targeting: Combining costimulation blockade and bortezomib to permit kidney transplantation in sensitized recipients

scientific article published on 17 September 2018

Dysplasia discrimination in intestinal-type neoplasia of the esophagus and colon via digital image analysis

scientific article published on 5 August 2016

Early barriers to neonatal porcine islet engraftment in a dual transplant model.

scientific article published on 25 November 2017

Early detection and staging of chronic liver diseases with a protein MRI contrast agent

scientific article published on 29 October 2019

Emerging role of B cells in chronic allograft dysfunction

scientific article

Eosinophilic granulomatous gastrointestinal and hepatic abscesses attributable to basidiobolomycosis and fasciolias: a simultaneous emergence in Iraqi Kurdistan.

scientific article

Establishment of human metastatic colorectal cancer model in rabbit liver: A pilot study

scientific article

Establishment of the cancer prevention study II nutrition cohort colorectal tissue repository

scientific article published on 01 December 2014

Evidence for kidney rejection after combined bone marrow and renal transplantation despite ongoing whole-blood chimerism in rhesus macaques.

scientific article

Excision repair cross-complementing gene-1, ribonucleotide reductase subunit M1, ribonucleotide reductase subunit M2, and human equilibrative nucleoside transporter-1 expression and prognostic value in biliary tract malignancy

scientific article published on 3 July 2012

Fc-Silent Anti-CD154 Domain Antibody Effectively Prevents Nonhuman Primate Renal Allograft Rejection

scientific article published on 17 January 2017

Fidelity and evolution of recurrent FSGS in renal allografts.

scientific article published on 25 June 2008

Flagellin, a TLR5 agonist, reduces graft-versus-host disease in allogeneic hematopoietic stem cell transplantation recipients while enhancing antiviral immunity

scientific article published on 17 October 2011

Follicular localization of dendritic cells in a xanthomatous inflammatory tumor of lung associated with human herpes virus-8 infection

scientific article published on 8 November 2006

GPRC5A suppresses protein synthesis at the endoplasmic reticulum to prevent radiation-induced lung tumorigenesis

scientific article

Glial cell line-derived neurotrophic factor protects against high-fat diet-induced hepatic steatosis by suppressing hepatic PPAR-γ expression

scientific article

Glomerular number and size in autopsy kidneys: the relationship to birth weight

scientific article

Guidelines for the diagnosis of antibody-mediated rejection in pancreas allografts-updated Banff grading schema

scientific article published on 03 August 2011

HER2 in resected gastric cancer: Is there prognostic value?

scientific article published on 10 October 2013

Heat shock protein 90 promotes epithelial to mesenchymal transition, invasion, and migration in colorectal cancer.

scientific article

Hepatocellular carcinoma in an adult with repaired tetralogy of fallot

scientific article published on 16 August 2012

Hepatocellular carcinoma lesion characterization: single-institution clinical performance review of multiphase gadolinium-enhanced MR imaging--comparison to prior same-center results after MR systems improvements

scientific article published on 03 October 2011

Hepatoid adenocarcinoma of the lung: a case report and review of the literature.

scientific article published on December 2014

Honokiol Increases CD4+ T Cell Activation and Decreases TNF but Fails to Improve Survival Following Sepsis

scientific article

Hypergastrinemia, type 1 gastric carcinoid tumors: diagnosis and management

scientific article published on 11 July 2011

IL-21 Biased Alemtuzumab Induced Chronic Antibody-Mediated Rejection Is Reversed by LFA-1 Costimulation Blockade

article

Impact of Leukocyte Function-Associated Antigen-1 Blockade on Endogenous Allospecific T Cells to Multiple Minor Histocompatibility Antigen Mismatched Cardiac Allograft

scientific article published on 22 June 2015

Impact on the Clinical Outcome of Prostate Cancer by the 2005 International Society of Urological Pathology Modified Gleason Grading System ⬇️

scientific article published on June 1, 2012

Implementation of point-of-care rapid urine testing for drugs of abuse in the emergency department of an academic medical center: impact on test utilization and ED length of stay

Inhibition of IKKβ in enterocytes exacerbates sepsis-induced intestinal injury and worsens mortality.

scientific article published on October 2013

Inhibition of αvβ6 promotes acute renal allograft rejection in nonhuman primates

scientific article published on 01 October 2013

Intestine-specific deletion of microsomal triglyceride transfer protein increases mortality in aged mice

scientific article

LIVER STEATOSIS SEGMENTATION WITH DEEP LEARNING METHODS

scientific article published on 01 April 2019

Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival

scientific article published on 20 July 2020

Lessons Learned: Early Termination of a Randomized Trial of Calcineurin Inhibitor and Corticosteroid Avoidance Using Belatacept.

scientific article published on 28 May 2017

Lessons learned using different mouse models during space radiation-induced lung tumorigenesis experiments

scientific article published on 24 May 2016

Liver MRI and histological correlates in chronic liver disease on multiphase gadolinium-enhanced 3D gradient echo imaging.

scientific article published on 07 May 2012

Liver steatosis assessment: correlations among pathology, radiology, clinical data and automated image analysis software.

scientific article

Long-term survival of pig-to-rhesus macaque renal xenografts is dependent on CD4 T cell depletion

scientific article published on 05 April 2019

Loss of Junctional Adhesion Molecule A Promotes Severe Steatohepatitis in Mice on a Diet High in Saturated Fat, Fructose, and Cholesterol

scientific article

Low-grade fibromyxoid sarcoma: A potentially useful histologic finding

scientific article published on 16 May 2020

MicroRNA 375 mediates palmitate-induced enteric neuronal damage and high-fat diet-induced delayed intestinal transit in mice

scientific article published on 25 October 2013

Morphometric and visual evaluation of fibrosis in renal biopsies

scientific article

Murine Lung Cancer Increases CD4+ T Cell Apoptosis and Decreases Gut Proliferative Capacity in Sepsis

scientific article

Murine Pancreatic Cancer Alters T Cell Activation and Apoptosis and Worsens Survival After Cecal Ligation and Puncture

scientific article published on 01 June 2019

Myosin light chain kinase knockout improves gut barrier function and confers a survival advantage in polymicrobial sepsis

scientific article published on 07 June 2017

Necrotizing sialometaplasia-like change of the esophageal submucosal glands is associated with Barrett's esophagus. ⬇️

scientific article published on 27 May 2014

Neutralizing BAFF/APRIL with atacicept prevents early DSA formation and AMR development in T cell depletion induced nonhuman primate AMR model.

scientific article

Novel synthetic curcumin analogues EF31 and UBS109 are potent DNA hypomethylating agents in pancreatic cancer

scientific article published on 7 August 2013

Overlapping pathways to transplant glomerulopathy: chronic humoral rejection, hepatitis C infection, and thrombotic microangiopathy

scientific article

Oxaliplatin-induced hepatoportal sclerosis, portal hypertension, and variceal bleeding successfully treated with transjugular intrahepatic portosystemic shunt

scientific article published on 25 April 2012

PRO-C3, a Serological Marker of Fibrosis, During Childhood and Correlations With Fibrosis in Pediatric NAFLD

scientific article published on 08 July 2021

Pancreatitis, Other Inflammatory Lesions, and Pancreatic Pseudotumors

scientific article published on 30 May 2011

Partial therapeutic response to Rituximab for the treatment of chronic alloantibody mediated rejection of kidney allografts.

scientific article published on 30 August 2012

Patterns of de novo allo B cells and antibody formation in chronic cardiac allograft rejection after alemtuzumab treatment.

scientific article published on 3 July 2012

Phenotypic T cell exhaustion in a murine model of bacterial infection in the setting of pre-existing malignancy

scientific article

Pre-transplant antibody screening and anti-CD154 costimulation blockade promote long-term xenograft survival in a pig-to-primate kidney transplant model.

scientific article published on 03 April 2015

Preoperative Carfilzomib and Lulizumab based desensitization prolongs graft survival in a sensitized non-human primate model

scientific article published on 05 September 2020

Pretransplant Desensitization with Costimulation Blockade and Proteasome Inhibitor Reduces DSA and Delays Antibody-Mediated Rejection in Highly Sensitized Nonhuman Primate Kidney Transplant Recipients

scientific article published on 28 October 2019

Prevention of lymphocyte apoptosis in septic mice with cancer increases mortality

scientific article

Prostate cancer metastatic to bone has higher expression of the calcium-sensing receptor (CaSR) than primary prostate cancer

scientific article published on January 2014

Pulmonary "inflammatory myofibroblastic" tumors: a critical examination of the diagnostic category based on quantitative immunohistochemical analysis

scientific article published on 20 March 2007

Quantitative assessment of liver fibrosis by digital image analysis reveals correlation with qualitative clinical fibrosis staging in liver transplant patients

scientific article published on 28 September 2020

Rapamycin Interferes With Postdepletion Regulatory T Cell Homeostasis and Enhances DSA Formation Corrected by CTLA4-Ig.

scientific article published on 8 April 2016

Redundant Functions of ERK1 and ERK2 Maintain Mouse Liver Homeostasis Through Down-Regulation of Bile Acid Synthesis

scientific article published on 22 December 2021

Renal Medullary and Cortical Correlates in Fibrosis, Epithelial Mass, Microvascularity, and Microanatomy Using Whole Slide Image Analysis Morphometry.

scientific article

Renal allograft granulomatous interstitial nephritis: observations of an uncommon injury pattern in 22 transplant recipients.

scientific article published on February 2017

Renal interstitial fibrosis: mechanisms and evaluation

scientific article

Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images

scientific article published on 01 July 2018

Selective Targeting of High-Affinity LFA-1 Does Not Augment Costimulation Blockade in a Nonhuman Primate Renal Transplantation Model

scientific article published on 26 November 2016

Sessile serrated adenoma: challenging discrimination from other serrated colonic polyps

scientific article published in January 2008

Stathmin 1 Induces Murine Hepatocyte Proliferation and Increased Liver Mass

scientific article published on 07 November 2019

Studies Introducing Costimulation Blockade for Vascularized Composite Allografts in Nonhuman Primates.

scientific article published on 02 July 2015

Successful desensitization with proteasome inhibition and costimulation blockade in sensitized nonhuman primates

scientific article published on 26 October 2017

Synergistic chiral separations using the glycopeptides ristocetin A and vancomycin

scientific article

Targeting Calcium Release-activated Calcium Channel Is Not Sufficient to Prevent Rejection in Nonhuman Primate Kidney Transplantation

scientific article published on 01 May 2020

The Banff 2019 Kidney Meeting Report (I): Updates on and clarification of criteria for T cell- and antibody-mediated rejection

scientific article published on 28 May 2020

The Impact of New Technologic and Molecular Advances in the Daily Practice of Gastrointestinal and Hepatobiliary Pathology

scientific article published on 3 February 2017

The dichotomy in carcinogenesis of the distal esophagus and esophagogastric junction: intestinal-type vs cardiac-type mucosa-associated adenocarcinoma.

scientific article published on 13 May 2011

The rectal tonsil: a reactive lymphoid proliferation that may mimic lymphoma

scientific article published on 01 July 2008

The role of heat shock protein 70 in mediating age-dependent mortality in sepsis

scientific article

Thrombalexin: Use of a Cytotopic Anticoagulant to Reduce Thrombotic Microangiopathy in a Highly Sensitized Model of Kidney Transplantation

scientific article

Tubular expression of KIM-1 does not predict delayed function after transplantation

scientific article (publication date: March 2010)

Tumoral and angiogenesis factors in hepatocellular carcinoma after locoregional therapy

scientific article published on 15 November 2011

Western diet-induced increase in colonic bile acids compromises epithelial barrier in nonalcoholic steatohepatitis

scientific article published on 10 April 2020

What is the best way to measure renal fibrosis?: A pathologist’s perspective

scientific article (publication date: November 2014)

Whole Slide Imaging for Analytical Anatomic Pathology and Telepathology: Practical Applications Today, Promises, and Perils.

scientific article

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