List of works - André Altmann

A beginners guide to SNP calling from high-throughput DNA-sequencing data

scientific article

A comprehensive analysis of methods for assessing polygenic burden on Alzheimer's disease pathology and risk beyond APOE

scientific article published on 16 December 2019

A polymorphism in the Crhr1 gene determines stress vulnerability in male mice

scientific article published on 28 April 2014

Advantages of predicted phenotypes and statistical learning models in inferring virological response to antiretroviral therapy from HIV genotype

scientific article published in January 2009

Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models

scientific article

BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks

scientific article published on 11 June 2015

Childhood maltreatment is associated with distinct genomic and epigenetic profiles in posttraumatic stress disorder

scientific article

Comparison of classifier fusion methods for predicting response to anti HIV-1 therapy

scientific article

Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice

scientific article

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.

scientific article published on 26 April 2011

Cost-effective GPU-grid for genome-wide epistasis calculations

scientific article published on 7 December 2012

Dealing with sparse data in predicting outcomes of HIV combination therapies.

scientific article

Detecting rare variants for psychiatric disorders using next generation sequencing: a methods primer.

scientific article published on January 2013

Efficacy of antiretroviral therapy switch in HIV-infected patients: a 10-year analysis of the EuResist Cohort.

scientific article published on 24 January 2012

Evaluation of inter-observer variation for computed tomography identification of childhood interstitial lung disease

scientific article published on 29 July 2019

Evolution of raltegravir resistance during therapy.

scientific article published on 14 May 2009

Functional coding variants in SLC6A15, a possible risk gene for major depression.

scientific article

GLIDE: GPU-based linear regression for detection of epistasis

scientific article published on 4 September 2012

Genetic Differences in the Immediate Transcriptome Response to Stress Predict Risk-Related Brain Function and Psychiatric Disorders

scientific article published in June 2015

Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.

scientific article published in July 2018

Genome wide association study of incomplete hippocampal inversion in adolescents

scientific article published on 28 January 2020

HIV-1 mutational pathways under multidrug therapy

scientific article published on 27 July 2011

Hearing difficulty is linked to Alzheimer’s disease by common genetic vulnerability, not shared genetic architecture

scientific article published in 2021

Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance

scientific article published in January 2007

Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment.

scientific article

Learning from past treatments and their outcome improves prediction of in vivo response to anti-HIV therapy

scientific article published on 14 January 2011

Longitudinal prediction of outcome in idiopathic pulmonary fibrosis using automated CT analysis

scientific article published on 30 September 2019

Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning

scientific article published on 05 June 2019

Network propagation of rare variants in Alzheimer's disease reveals tissue-specific hub genes and communities

scientific article published on 07 January 2021

Only slight impact of predicted replicative capacity for therapy response prediction

scientific article

Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control.

scientific article published on 6 September 2017

Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization

scientific article published in April 2016

Permutation importance: a corrected feature importance measure

scholarly article

Predicting Outcomes in Idiopathic Pulmonary Fibrosis Using Automated Computed Tomographic Analysis

scientific article published on 01 September 2018

Predicting response to antiretroviral treatment by machine learning: the EuResist project

scientific article published on 24 January 2012

Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database.

scientific article published in April 2009

Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study).

scientific article

Rare variants in TMEM132D in a case-control sample for panic disorder

scientific article published on 22 August 2012

Re-Annotator: Annotation Pipeline for Microarray Probe Sequences.

scientific article published on October 2015

Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores

scientific article published on 20 August 2008

Selecting anti-HIV therapies based on a variety of genomic and clinical factors

scientific article published on July 2008

Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study.

scientific article published on 22 January 2018

Susceptibility of brain atrophy to in Alzheimer's disease, evidence from functional prioritization in imaging genetics

article published in the Proceedings of the National Academy of Sciences of the United States of America

The ENIGMA-Epilepsy working group: Mapping disease from large data sets

scientific article published on 29 May 2020

Validation of non-REM sleep stage decoding from resting state fMRI using linear support vector machines

scientific article published on 24 October 2015

pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm

scientific article published on 27 September 2021

List of works by André Altmann

A beginners guide to SNP calling from high-throughput DNA-sequencing data

A comprehensive analysis of methods for assessing polygenic burden on Alzheimer's disease pathology and risk beyond APOE

A polymorphism in the Crhr1 gene determines stress vulnerability in male mice

Advantages of predicted phenotypes and statistical learning models in inferring virological response to antiretroviral therapy from HIV genotype

Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models

BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks

Childhood maltreatment is associated with distinct genomic and epigenetic profiles in posttraumatic stress disorder

Comparison of classifier fusion methods for predicting response to anti HIV-1 therapy

Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models.

Cost-effective GPU-grid for genome-wide epistasis calculations

Dealing with sparse data in predicting outcomes of HIV combination therapies.

Detecting rare variants for psychiatric disorders using next generation sequencing: a methods primer.

Efficacy of antiretroviral therapy switch in HIV-infected patients: a 10-year analysis of the EuResist Cohort.

Evaluation of inter-observer variation for computed tomography identification of childhood interstitial lung disease

Evolution of raltegravir resistance during therapy.

Functional coding variants in SLC6A15, a possible risk gene for major depression.

GLIDE: GPU-based linear regression for detection of epistasis

Genetic Differences in the Immediate Transcriptome Response to Stress Predict Risk-Related Brain Function and Psychiatric Disorders

Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.

Genome wide association study of incomplete hippocampal inversion in adolescents

HIV-1 mutational pathways under multidrug therapy

Hearing difficulty is linked to Alzheimer’s disease by common genetic vulnerability, not shared genetic architecture

Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance

Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment.

Learning from past treatments and their outcome improves prediction of in vivo response to anti-HIV therapy

Longitudinal prediction of outcome in idiopathic pulmonary fibrosis using automated CT analysis

Modeling longitudinal imaging biomarkers with parametric Bayesian multi-task learning

Network propagation of rare variants in Alzheimer's disease reveals tissue-specific hub genes and communities

Only slight impact of predicted replicative capacity for therapy response prediction

Overdominant Effect of a CHRNA4 Polymorphism on Cingulo-Opercular Network Activity and Cognitive Control.

Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization

Permutation importance: a corrected feature importance measure

Predicting Outcomes in Idiopathic Pulmonary Fibrosis Using Automated Computed Tomographic Analysis

Predicting response to antiretroviral treatment by machine learning: the EuResist project

Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database.

Prediction of response to antiretroviral therapy by human experts and by the EuResist data-driven expert system (the EVE study).

Rare variants in TMEM132D in a case-control sample for panic disorder

Re-Annotator: Annotation Pipeline for Microarray Probe Sequences.

Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores

Selecting anti-HIV therapies based on a variety of genomic and clinical factors

Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study.

Susceptibility of brain atrophy to in Alzheimer's disease, evidence from functional prioritization in imaging genetics

The ENIGMA-Epilepsy working group: Mapping disease from large data sets

Validation of non-REM sleep stage decoding from resting state fMRI using linear support vector machines

pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm