List of works by David A. Matthews

A comparison of host gene expression signatures associated with infection in vitro by the Makona and Ecran (Mayinga) variants of Ebola virus.

scientific article published on 27 February 2017

A role for transportin in the nuclear import of adenovirus core proteins and DNA.

scientific article published on October 2007

Adenoviral protein V promotes a process of viral assembly through nucleophosmin 1.

scientific article

Adenovirus core protein VII contains distinct sequences that mediate targeting to the nucleus and nucleolus, and colocalization with human chromosomes

scientific article published on December 2003

Adenovirus protein-protein interactions: hexon and protein VI.

scientific article

Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19

scientific article (preprint)

Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers

scientific article published on 01 May 2022

Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care

scientific article published on 11 January 2021

Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics

scientific article

Analysis of relatedness of subgroup A respiratory syncytial viruses isolated worldwide.

scientific article

Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein

scientific article published on 28 July 2020

Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage si

scientific article published on 25 March 2020

Comparison between the interactions of adenovirus-derived peptides with plasmid DNA and their role in gene delivery mediated by liposome-peptide-DNA virus-like nanoparticles

scientific article published in July 2003

Comparison of protein expression during wild-type, and E1B-55k-deletion, adenovirus infection using quantitative time-course proteomics

scientific article

Core labeling of adenovirus with EGFP.

scientific article published on 6 May 2006

De novo derivation of proteomes from transcriptomes for transcript and protein identification

scientific article published on 11 November 2012

Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut.

scientific article published on July 2017

Deep splicing plasticity of the human adenovirus type 5 transcriptome drives virus evolution

scientific article published on 13 March 2020

Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity ⬇️

scientific article

Elucidation of the Ebola virus VP24 cellular interactome and disruption of virus biology through targeted inhibition of host-cell protein function ⬇️

scientific article published on 23 October 2014

Factors affecting de novo RNA synthesis and back-priming by the respiratory syncytial virus polymerase

scientific article published on 8 July 2014

Frequent polymerase errors observed in a restricted area of clones derived from the attachment (G) protein gene of respiratory syncytial virus.

scientific article published on February 1993

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics.

scientific article published on 12 August 2015

Genotyping coronaviruses associated with feline infectious peritonitis.

scientific article published on 9 February 2015

High throughput discovery of protein variants using proteomics informed by transcriptomics.

scientific article

High-throughput quantitative proteomic analysis of dengue virus type 2 infected A549 cells

scientific article

Identification of Epstein-Barr Virus Replication Proteins in Burkitt's Lymphoma Cells

scientific article

Identification of mutations contributing to the reduced virulence of a modified strain of respiratory syncytial virus

scientific article published in December 1996

Impact of voluntary risk-mitigation behaviour on transmission of the Omicron SARS-CoV-2 variant in England

scientific article published on 28 January 2022

In vitro dynamic visualization analysis of fluorescently labeled minor capsid protein IX and core protein V by simultaneous detection

scientific article published on 21 October 2009

Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach ⬇️

scientific article published on 9 December 2015

Mitochondrial protein p32 can accumulate in the nucleus.

scientific article

Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs

scientific article published on 01 April 2022

Neuropilin-1 is a host factor for SARS-CoV-2 infection

scientific article published on 20 October 2020

Nucleolar protein upstream binding factor is sequestered into adenovirus DNA replication centres during infection without affecting RNA polymerase I location or ablating rRNA synthesis

scientific article published in June 2006

Nucleolar proteomics and viral infection

scientific article

PITDB: a database of translated genomic elements.

scientific article published on 9 October 2017

Precursor of human adenovirus core polypeptide Mu targets the nucleolus and modulates the expression of E2 proteins

scientific article published in January 2004

Proteomics analysis of the nucleolus in adenovirus-infected cells

scientific article published on 7 October 2009

Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti.

scientific article

Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection

scientific article published on 14 August 2017

Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis

scientific article

Proteomics technique opens new frontiers in mobilome research

scientific article

Quantitative proteomics using SILAC coupled to LC-MS/MS reveals changes in the nucleolar proteome in influenza A virus-infected cells

scientific article published on October 2010

Real-time, portable genome sequencing for Ebola surveillance

scientific article

Relationship between adenovirus DNA replication proteins and nucleolar proteins B23.1 and B23.2.

scientific article published on December 2007

Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2

scientific article published on 11 January 2022

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa

scientific article published on 17 June 2015

The Herpesvirus Saimiri open reading frame 73 gene product interacts with the cellular protein p32.

scientific article

The herpesvirus saimiri ORF73 gene product interacts with host-cell mitotic chromosomes and self-associates via its C terminus.

scientific article published in January 2004

The interactome of the human respiratory syncytial virus NS1 protein highlights multiple effects on host cell biology

scientific article (publication date: August 2012)

The nucleotide sequences of intergenic regions between nine genes of pneumonia virus of mice establish the physical order of these genes in the viral genome

scientific article published in March 1991

The splicing factor-associated protein, p32, regulates RNA splicing by inhibiting ASF/SF2 RNA binding and phosphorylation

scientific article

Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus

scientific article published on 19 January 2017

Upstream-binding factor is sequestered into herpes simplex virus type 1 replication compartments

scientific article published on January 2009

Using SILAC and quantitative proteomics to investigate the interactions between viral and host proteomes

scientific article published on 19 January 2012

Virus genomes reveal factors that spread and sustained the Ebola epidemic

scientific article (publication date: 12 April 2017)

What is new in the nucleolus?: workshop on the nucleolus: new perspectives

scientific article published on 18 August 2006

Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity.

scientific article published on 28 March 2018

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