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List of works by Robert M. Stupar

A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar

scientific article published on 25 June 2013

A roadmap for functional structural variants in the soybean genome

scientific article published on 22 May 2014

Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize

scientific article published on 10 August 2007

An Induced Chromosomal Translocation in Soybean Disrupts a KASI Ortholog and Is Associated with a High-Sucrose and Low-Oil Seed Phenotype

scientific article published on 24 February 2017

CRISPR/Cas mutagenesis of soybean and Medicago truncatula using a new web-tool and a modified Cas9 enzyme

scientific article published on 19 October 2015

CRISPR/Cas9 and TALENs generate heritable mutations for genes involved in small RNA processing of Glycine max and Medicago truncatula.

scientific article published on 31 October 2017

Characterization of genetic heterogeneity within accessions in the USDA soybean germplasm collection

scientific article published on 01 March 2020

Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid

scientific article

Co-expression of soybean Dicer-like genes in response to stress and development

scientific article published on 15 April 2012

Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.

scientific article published on 17 April 2001

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Dissecting the Genetic Basis of Local Adaptation in Soybean.

scientific article published on 8 December 2017

Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans

scientific article published on 27 January 2016

Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes

scientific article

Fluorescence in situ hybridization analysis reveals multiple loci of knob-associated DNA elements in one-knob and knobless maize lines

scientific article published on 01 August 2004

Functional analysis and development of a CRISPR/Cas9 allelic series for a CPR5 ortholog necessary for proper growth of soybean trichomes

scientific article published on 14 October 2019

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis

scientific article

Genetic Architecture of Soybean Yield and Agronomic Traits

article

Genome Editing in Soybean with CRISPR/Cas9

scientific article published on 01 January 2019

Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.

scientific article

Genomic Heterogeneity and Structural Variation in Soybean Near Isogenic Lines ⬇️

scientific article published on April 24, 2013

Genomic changes and biochemical alterations of seed protein and oil content in a subset of fast neutron induced soybean mutants

scientific article published on 12 October 2019

Hybrid assembly with long and short reads improves discovery of gene family expansions

scientific article

Identical substitutions in magnesium chelatase paralogs result in chlorophyll-deficient soybean mutants

scientific article

Identification and characterization of a fast-neutron-induced mutant with elevated seed protein content in soybean

scientific article published on 19 July 2019

Integration, abundance, and transmission of mutations and transgenes in a series of CRISPR/Cas9 soybean lines

scientific article published on 24 February 2020

Into the wild: The soybean genome meets its undomesticated relative.

scientific article

MicroRNA Maturation and MicroRNA Target Gene Expression Regulation Are Severely Disrupted in Soybean dicer-like1 Double Mutants

scientific article

Neo-Domestication of an Interspecific Tetraploid Helianthus annuus × Helianthus tuberous Population That Segregates for Perennial Habit

Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm

scientific article published on 31 August 2007

Perennial Grain and Oilseed Crops.

scientific article published on 18 January 2016

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean ⬇️

scientific article published on February 14, 2011

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

scientific article published on 10 April 2009

Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants

scientific article published on 06 August 2019

Soybean (Glycine max) Mutant and Germplasm Resources: Current Status and Future Prospects

scientific article published on 01 March 2016

Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.

scientific article published on 04 August 2017

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes ⬇️

scientific article published on June 13, 2012

Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris

scientific article published on 20 August 2010

Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development.

scientific article

Targeted mutagenesis for functional analysis of gene duplication in legumes

scientific article

Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases

scientific article

The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development.

scientific article

The Role of Deleterious Substitutions in Crop Genomes.

scientific article published on 14 June 2016

The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82.

scientific article published on 29 November 2010

The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants.

scientific article published in June 2018

To the reference and beyond: understanding variation in plant genomes

scientific article published on 01 July 2014

Transcriptome analysis of the barley-deoxynivalenol interaction: evidence for a role of glutathione in deoxynivalenol detoxification

scientific article published in July 2010

Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism

scientific article published on 9 August 2017

Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation.

scientific article published on 5 January 2017

Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode

scientific article published on 20 February 2019

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