List of works by Jeremy Leipzig

A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level.

scientific article published on October 2012

A review of bioinformatic pipeline frameworks

scientific article (publication date: 24 March 2016)

A role for LEDGF/p75 in targeting HIV DNA integration

scientific article published on 27 November 2005

Association Between Mitochondrial DNA Haplogroup Variation and Autism Spectrum Disorders.

scientific article

Comparison of brain metabolic activity patterns induced by ketamine, MK-801 and amphetamine in rats: support for NMDA receptor involvement in responses to subanesthetic dose of ketamine

scientific article published in October 1999

Computational Pipelines and Workflows in Bioinformatics

scientific article published in 2019

DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer

scientific article published on 14 April 2008

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations

scientific article published on 18 June 2007

De novo mutations in histone-modifying genes in congenital heart disease.

scientific article

Differential effects of clozapine and haloperidol on ketamine-induced brain metabolic activation.

scientific article published in November 1998

Effects of ketamine, MK-801, and amphetamine on regional brain 2-deoxyglucose uptake in freely moving mice

scientific article published in April 2000

Efficient digest of high-throughput sequencing data in a reproducible report.

scientific article

Genome-wide analysis of retroviral DNA integration

scientific article

HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

scientific article published in June 2007

HIV integration site selection: targeting in macrophages and the effects of different routes of viral entry.

scientific article

HTLV-1 integration into transcriptionally active genomic regions is associated with proviral expression and with HAM/TSP

scientific article

Increased frequency of de novo copy number variants in congenital heart disease by integrative analysis of single nucleotide polymorphism array and exome sequence data

scientific article

Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts.

scientific article published on December 2005

Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome

scientific article

MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to Facilitate Genomic Investigations in Mitochondrial Disease

scientific article published on 26 February 2016

Mitochondrial Disease Sequence Data Resource (MSeqDR): a global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities

scientific article (publication date: March 2015)

Mitochondrial energy deficiency leads to hyperproliferation of skeletal muscle mitochondria and enhanced insulin sensitivity

scientific article published on 21 February 2017

Peripheral Blood Mitochondrial DNA as a Biomarker of Cerebral Mitochondrial Dysfunction following Traumatic Brain Injury in a Porcine Model

scientific article published on 22 June 2015

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.

scientific article

Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP.

scientific article

Retroviral DNA integration: viral and cellular determinants of target-site selection

scientific article

Selection of target sites for mobile DNA integration in the human genome

scientific article (publication date: 24 November 2006)

The role of metadata in reproducible computational research

preprint published on 16 June 2020

mtDNA Variation and Analysis Using Mitomap and Mitomaster

scientific article

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