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List of works by Paulo Célio Alves

A Critically Endangered new dragonfly species from Morocco: Onychogomphus boudoti sp. nov. (Odonata: Gomphidae)

scientific article (publication date: 25 August 2014)

A genomic map of clinal variation across the European rabbit hybrid zone

scientific article published on 23 January 2018

A metaproteomics approach reveals changes in mandibular lymph node microbiota of wild boar naturally exposed to an increasing trend of Mycobacterium tuberculosis complex infection

scientific article published on 20 December 2018

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

scientific article published in Science

Advancing ecological understandings through technological transformations in noninvasive genetics.

scientific article published on 12 May 2009

An Annotated Draft Genome of the Mountain Hare (Lepus timidus)

scientific article published on 01 January 2020

An update on the rabbit hemorrhagic disease virus (RHDV) strains circulating in Portugal in the 1990s: earliest detection of G3-G5 and G6.

scientific article

Ancient introgression of Lepus timidus mtDNA into L. granatensis and L. europaeus in the Iberian Peninsula

scientific article published in April 2003

Applying genomic data in wildlife monitoring: Development guidelines for genotyping degraded samples with reduced single nucleotide polymorphism panels

scientific article published on 10 January 2020

Biometrical analysis reveals major differences between the two subspecies of the European rabbit

Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits

scientific article

Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group

scientific article published on 19 October 2017

Coccidiosis in European rabbit (Oryctolagus cuniculus algirus) populations in the Iberian Peninsula.

scientific article

Colonization history of Mallorca Island by the European rabbit,Oryctolagus cuniculus, and the Iberian hare,Lepus granatensis(Lagomorpha: Leporidae)

Combining distribution modelling and non-invasive genetics to improve range shift forecasting

article

Combining molecular and landscape tools for targeting evolutionary processes in reserve design: An approach for islands

scientific article published in PLoS ONE

Comparative Proteomics Identifies Host Immune System Proteins Affected by Infection with Mycobacterium bovis

scientific article (publication date: March 2016)

Conservation implications of the evolutionary history and genetic diversity hotspots of the snowshoe hare

scientific article

Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia.

scientific article published on 19 November 2012

Detection of RHDV strains in the Iberian hare (Lepus granatensis): earliest evidence of rabbit lagovirus cross-species infection.

scientific article

Diet of the Iberian hare (Lepus granatensis) in a mountain ecosystem

scholarly article by Joana Paupério published in March 2008

Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs

scientific article published on 31 October 2016

Effect of microsatellite selection on individual and population genetic inferences: an empirical study using cross-specific and species-specific amplifications.

scientific article

Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole.

scientific article

Epidemiology of RHDV2 (Lagovirus europaeus/GI.2) in free-living wild European rabbits in Portugal

scientific article

Estimating home-range size: when to include a third dimension?

scientific article published on 08 June 2013

European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation?

scientific article

Evidence for genetic similarity of two allopatric European hares (Lepus corsicanus and L. castroviejoi) inferred from nuclear DNA sequences.

scientific article published on 28 November 2007

Evidence for niche similarities in the allopatric sister speciesLepus castroviejoiandLepus corsicanus

article

Evolution of rabbit haemorrhagic disease virus (RHDV) in the European rabbit (Oryctolagus cuniculus) from the Iberian Peninsula.

scientific article published on 21 September 2008

Evolutionary history of two cryptic species of northern African jerboas

scientific article published on 13 February 2020

Experimental study on the effect of cover and vaccination on the survival of juvenile European rabbits

scientific article published in 2013

Feline mitochondrial DNA sampling for forensic analysis: when enough is enough!

scientific article

Females know better: Sex-biased habitat selection by the European wildcat

article

Field experimental vaccination campaigns against myxomatosis and their effectiveness in the wild

scientific article published in October 2009

Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?

scientific article published on 5 March 2018

Gastrointestinal parasite infestation in the alpine mountain hare (Lepus timidus varronis): Are abiotic environmental factors such as elevation, temperature and precipitation affecting prevalence of parasite species?

scientific article

Genetic distinctiveness of the damselfly Coenagrion puella in North Africa: an overlooked and endangered taxon

Genetic diversity within scorpions of the genus Buthus from the Iberian Peninsula: mitochondrial DNA sequence data indicate additional distinct cryptic lineages

article published in 2010

Genetic identification of Iberian rodent species using both mitochondrial and nuclear loci: application to noninvasive sampling.

scientific article

Genetic identification of endangered North African ungulates using noninvasive sampling

scientific article published on 24 October 2014

Genome-wide associations identify novel candidate loci associated with genetic susceptibility to tuberculosis in wild boar

scientific article published on 31 January 2018

Genomic approaches to identify hybrids and estimate admixture times in European wildcat populations

scientific article published on 12 August 2019

Genomics and the challenging translation into conservation practice

scientific article published on 17 December 2014

Glacial cycles drive rapid divergence of cryptic field vole species

scientific article published on 23 November 2019

Hares in Corsica: high prevalence of Lepus corsicanus and hybridization with introduced L. europaeus and L. granatensis

Hares on thin ice: Introgression of mitochondrial DNA in hares and its implications for recent phylogenetic analyses

scholarly article by Paulo Célio Alves et al published August 2006 in Molecular Phylogenetics and Evolution

Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring

scientific article published on 29 April 2019

Home-loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing.

scientific article published on 23 October 2013

Hotspot variation at the CH2-CH3 interface of leporid IgG antibodies (Oryctolagus, Sylvilagus and Lepus).

scientific article published in December 2002

Hybridization versus conservation: are domestic cats threatening the genetic integrity of wildcats (Felis silvestris silvestris) in Iberian Peninsula?

scientific article

Inferring past refugia and range dynamics through the integration of fossil, niche modelling and genomic data

scientific article published in 2022

Influence of habitat management on the abundance and diet of wild rabbit (Oryctolagus cuniculus algirus) populations in Mediterranean ecosystems

article by Catarina Ferreira & Paulo Célio Alves published 2 April 2009 in European Journal of Wildlife Research

Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI.2) and the identification of novel recombinant strains.

scientific article published on 11 February 2018

Integrative approaches to guide conservation decisions: Using genomics to define conservation units and functional corridors

scientific article published on 13 August 2018

Interspecific X-chromosome and mitochondrial DNA introgression in the Iberian hare: selection or allele surfing? ⬇️

scientific article published on March 16, 2011

Intraspecific genetic diversity and distribution of North African hedgehogs (Mammalia: Erinaceidae)

scientific article published on 4 April 2019

Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?

scientific article

Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations?

scientific article

LaGomiCs-Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order

scientific article published on 26 February 2016

Leporid immunoglobulin G shows evidence of strong selective pressure on the hinge and CH3 domains

scientific article

Local extinctions and range contraction of the endangered Coenagrion mercuriale in North Africa ⬇️

article

MAMMALS IN PORTUGAL : A data set of terrestrial, volant, and marine mammal occurrences in P ortugal

scientific article published on 12 April 2022

Molecular analysis of hybridisation between wild and domestic cats (Felis silvestris) in Portugal: implications for conservation

article

Molecular and ecological signs of mitochondrial adaptation: consequences for introgression?

scientific article

Molecular and morphological insights into the origin of the invasive greater white-toothed shrew (Crocidura russula) in Ireland

Molecular bases of genetic diversity and evolution of the immunoglobulin heavy chain variable region (IGHV) gene locus in leporids ⬇️

scientific article (publication date: July 2011)

Molecular phylogeny of the Western PalaearcticCordulegastertaxa (Odonata: Anisoptera: Cordulegastridae)

scholarly article by Elsa Froufe et al published 29 October 2013 in Biological Journal of the Linnean Society

Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts

scientific article published on 15 January 2024

Mountain hare transcriptome and diagnostic markers as resources to monitor hybridization with European hares

scientific article

New genetic variation in European hares, Lepus granatensis and L. europaeus

scientific article published on 01 April 2000

New variant of rabbit hemorrhagic disease virus, Portugal, 2012-2013.

scientific article published on November 2013

Parapatric species and the implications for climate change studies: a case study on hares in Europe

article

Past, Present and Future Distributions of an Iberian Endemic, Lepus granatensis: Ecological and Evolutionary Clues from Species Distribution Models ⬇️

scientific article published on December 13, 2012

Phylogeography of roe deer (Capreolus capreolus) populations: the effects of historical genetic subdivisions and recent nonequilibrium dynamics

article

Population genetics of cape and brown hares (Lepus capensis and L. europaeus): A test of Petter's hypothesis of conspecificity

article

Quantification of the Animal Tuberculosis Multi-Host Community Offers Insights for Control

scientific article published on 28 May 2020

Range dynamics driven by Quaternary climate oscillations explain the distribution of introgressed mtDNA of Lepus timidusorigin in hares from the Iberian Peninsula

article

Range expansion underlies historical introgressive hybridization in the Iberian hare.

scientific article published on 25 January 2017

Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

scientific article

Red deer in Iberia: Molecular ecological studies in a southern refugium and inferences on European postglacial colonization history

scientific article published in PLoS ONE

Reply to Garner et al.

scientific article published on 15 December 2015

Restriction fragment alleles of the rabbit IGHG genes with reference to the rabbit IGHGCH2 or e locus polymorphism

article

Sequencing of Sylvilagus VDJ genes reveals a new VHa allelic lineage and shows that ancient VH lineages were retained differently in leporids

scientific article published on 30 September 2014

Sequencing of modern Lepus VDJ genes shows that the usage of VHn genes has been retained in both Oryctolagus and Lepus that diverged 12 million years ago.

scientific article published on 24 August 2013

Sex and Age-Specific Hematology and Biochemistry Reference Intervals of Live Iberian Hares (Lepus granatensis) and Comparison with Postmortem Sampling

scientific article published on 6 January 2021

Spatial climate dynamics in the Iberian Peninsula since 15 000 yr BP

scientific article

The Microtus voles: resolving the phylogeny of one of the most speciose mammalian genera using genomics

scientific article published on 21 March 2018

The effects of a motorway on movement behaviour and gene flow in a forest carnivore: Joint evidence from road mortality, radio tracking and genetics

article

The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression.

scientific article

The evolution of white-tailed jackrabbit camouflage in response to past and future seasonal climates

scientific article published on 23 March 2023

The evolutionary history of the Cape hare (Lepus capensis sensu lato): insights for systematics and biogeography

scientific article published on 09 May 2019

The evolutionary pathways for local adaptation in mountain hares

scientific article published in 2022

The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes.

scientific article

The hidden history of the snowshoe hare, Lepus americanus: extensive mitochondrial DNA introgression inferred from multilocus genetic variation.

scientific article

The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula.

scientific article published in February 2007

The transcriptional landscape of seasonal coat colour moult in the snowshoe hare.

scientific article

The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus

scientific article (publication date: 12 September 2008)

The usefulness of field data and hunting statistics in the assessment of wild rabbit (Oryctolagus cuniculus) conservation status in Portugal

article

Toward a genome-wide approach for detecting hybrids: informative SNPs to detect introgression between domestic cats and European wildcats (Felis silvestris)

scientific article

Transcriptomic regulation of seasonal coat color change in hares

scientific article published on 15 January 2020

Tuberculosis, genetic diversity and fitness in the red deer, Cervus elaphus

scientific article published on 28 May 2016

Understanding the impact of wild boar on the European wild rabbit and red-legged partridge populations using a diet metabarcoding approach

scientific article published in 2023

Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change.

scientific article

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