List of works - Ka Yee Yeung

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

scientific article published in Nature Communications

BMA: Bayesian Model Averaging

functions for fitting BMA models in R

Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data

scientific article

Bayesian robust inference for differential gene expression in microarrays with multiple samples

scientific article published in March 2006

Bcl-2 overexpression leads to increases in suppressor of cytokine signaling-3 expression in B cells and de novo follicular lymphoma.

scientific article

Building Containerized Workflows Using the BioDepot-Workflow-Builder

scientific article published on 11 September 2019

Cluster Analysis of Gene Expression Data ⬇️

doctoral thesis by Ka Yee Yeung, Computer Science & Engineering, University of Washington, 2001

Clustering gene-expression data with repeated measurements

scientific article

Construction of regulatory networks using expression time-series data of a genotyped population

scientific article

Correction: Multiclass classification of microarray data with repeated measurements: application to cancer.

scientific article

CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks.

scientific article published on 11 November 2015

Donuts, scratches and blanks: robust model-based segmentation of microarray images

scientific article published on 21 April 2005

Fast Bayesian inference for gene regulatory networks using ScanBMA.

scientific article

Fast Inference for the Latent Space Network Model Using a Case-Control Approximate Likelihood

scientific article

From co-expression to co-regulation: how many microarray experiments do we need?

scientific article

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

scientific article

Holistic optimization of an RNA-seq workflow for multi-threaded environments

scientific article published on 01 October 2019

Hot-starting software containers for STAR aligner.

scientific article published in August 2018

Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

scientific article

Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data

scientific article

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

scientific article

Methods for the inference of biological pathways and networks

scientific article published on January 2009

Multiclass classification of microarray data with repeated measurements: application to cancer

scientific article

Principal component analysis for clustering gene expression data.

scientific article

Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.

scientific article published on 28 October 2017

Temporal genetic association and temporal genetic causality methods for dissecting complex networks

scientific article published in Nature Communications

The derivation of diagnostic markers of chronic myeloid leukemia progression from microarray data

scientific article

Transcriptional analyses of Barrett's metaplasia and normal upper GI mucosae

scientific article published on March 2002

Validating clustering for gene expression data.

scientific article

List of works by Ka Yee Yeung

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

BMA: Bayesian Model Averaging

Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data

Bayesian robust inference for differential gene expression in microarrays with multiple samples

Bcl-2 overexpression leads to increases in suppressor of cytokine signaling-3 expression in B cells and de novo follicular lymphoma.

Building Containerized Workflows Using the BioDepot-Workflow-Builder

Cluster Analysis of Gene Expression Data ⬇️

Clustering gene-expression data with repeated measurements

Construction of regulatory networks using expression time-series data of a genotyped population

Correction: Multiclass classification of microarray data with repeated measurements: application to cancer.

CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks.

Donuts, scratches and blanks: robust model-based segmentation of microarray images

Fast Bayesian inference for gene regulatory networks using ScanBMA.

Fast Inference for the Latent Space Network Model Using a Case-Control Approximate Likelihood

From co-expression to co-regulation: how many microarray experiments do we need?

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

Holistic optimization of an RNA-seq workflow for multi-threaded environments

Hot-starting software containers for STAR aligner.

Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

Methods for the inference of biological pathways and networks

Multiclass classification of microarray data with repeated measurements: application to cancer

Principal component analysis for clustering gene expression data.

Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.

Temporal genetic association and temporal genetic causality methods for dissecting complex networks

The derivation of diagnostic markers of chronic myeloid leukemia progression from microarray data

Transcriptional analyses of Barrett's metaplasia and normal upper GI mucosae

Validating clustering for gene expression data.