List of works - Jin Yu

A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation

scientific article

A Viral T7 RNA Polymerase Ratcheting Along DNA With Fidelity Control

scientific article published on 09 May 2019

A critical residue selectively recruits nucleotides for t7 RNA polymerase transcription fidelity control.

scientific article

A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription

scientific article published on 7 February 2012

Balancing Non-Equilibrium Driving with Nucleotide Selectivity at Kinetic Checkpoints in Polymerase Fidelity Control

scientific article published on 23 April 2018

Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process.

scientific article published in June 2018

Conformational model of the Holliday junction transition deduced from molecular dynamics simulations

scientific article

Constructing kinetic models to elucidate structural dynamics of a complete RNA polymerase II elongation cycle.

scientific article published on 5 December 2014

Coupling translocation with nucleic acid unwinding by NS3 helicase

scientific article published on 29 September 2010

Determining selection free energetics from nucleotide pre-insertion to insertion in viral T7 RNA polymerase transcription fidelity control

scientific article published on 01 May 2019

Double-stranded DNA dissociates into single strands when dragged into a poor solvent

scientific article published on 6 November 2007

Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process

scientific article published on 14 December 2017

How directional translocation is regulated in a DNA helicase motor

scientific article

How does supercoiling regulation on a battery of RNA polymerases impact on bacterial transcription bursting?

scientific article published on 06 September 2018

Imaging Metastable States and Transitions in Proteins by Trajectory Map.

scientific article published on 20 April 2017

Inspecting fluctuation and coordination around chromophore inside green fluorescent protein from water to nonpolar solvent

scientific article published on 27 February 2019

Mechanism of Gating and Ion Conductivity of a Possible Tetrameric Pore in Aquaporin-1

article by Jin Yu et al published September 2006 in Structure

Mechanochemistry of a viral DNA packaging motor

scientific article published on 7 May 2010

Molecular mechanisms of RNA polymerase II transcription elongation elucidated by kinetic network models.

scientific article published on 2 February 2018

Nucleotide Selectivity at a Preinsertion Checkpoint of T7 RNA Polymerase Transcription Elongation.

scientific article published on 15 February 2017

PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

scientific article

Protein denaturation at a single-molecule level: the effect of nonpolar environments and its implications on the unfolding mechanism by proteases.

scientific article

Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8.

scientific article published on 19 June 2019

Structure-based model of the stepping motor of PcrA helicase

scientific article

T7 RNA polymerase translocation is facilitated by a helix opening on the fingers domain that may also prevent backtracking.

scientific article published on 31 May 2017

List of works by Jin Yu

A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation

A Viral T7 RNA Polymerase Ratcheting Along DNA With Fidelity Control

A critical residue selectively recruits nucleotides for t7 RNA polymerase transcription fidelity control.

A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription

Balancing Non-Equilibrium Driving with Nucleotide Selectivity at Kinetic Checkpoints in Polymerase Fidelity Control

Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process.

Conformational model of the Holliday junction transition deduced from molecular dynamics simulations

Constructing kinetic models to elucidate structural dynamics of a complete RNA polymerase II elongation cycle.

Coupling translocation with nucleic acid unwinding by NS3 helicase

Determining selection free energetics from nucleotide pre-insertion to insertion in viral T7 RNA polymerase transcription fidelity control

Double-stranded DNA dissociates into single strands when dragged into a poor solvent

Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process

How directional translocation is regulated in a DNA helicase motor

How does supercoiling regulation on a battery of RNA polymerases impact on bacterial transcription bursting?

Imaging Metastable States and Transitions in Proteins by Trajectory Map.

Inspecting fluctuation and coordination around chromophore inside green fluorescent protein from water to nonpolar solvent

Mechanism of Gating and Ion Conductivity of a Possible Tetrameric Pore in Aquaporin-1

Mechanochemistry of a viral DNA packaging motor

Molecular mechanisms of RNA polymerase II transcription elongation elucidated by kinetic network models.

Nucleotide Selectivity at a Preinsertion Checkpoint of T7 RNA Polymerase Transcription Elongation.

PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

Protein denaturation at a single-molecule level: the effect of nonpolar environments and its implications on the unfolding mechanism by proteases.

Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8.

Structure-based model of the stepping motor of PcrA helicase

T7 RNA polymerase translocation is facilitated by a helix opening on the fingers domain that may also prevent backtracking.