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List of works by Warwick Dunn

1H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon

scientific article

A GC-TOF-MS study of the stability of serum and urine metabolomes during the UK Biobank sample collection and preparation protocols

scientific article published in April 2008

A community-driven global reconstruction of human metabolism. ⬇️

scientific article

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

scientific article

A laser desorption ionisation mass spectrometry approach for high throughput metabolomics

A metabolome pipeline: from concept to data to knowledge

article by Marie Brown et al published March 2005 in Metabolomics

A metabolomic approach identifies differences in maternal serum in third trimester pregnancies that end in poor perinatal outcome.

scientific article published on 24 April 2012

A metabolomics investigation into the effects of HIV protease inhibitors on HPV16 E6 expressing cervical carcinoma cells

scientific article published on 10 January 2014

A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes

scientific article published on 04 July 2013

A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications

A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions

scientific article

AKR1C3-Mediated Adipose Androgen Generation Drives Lipotoxicity in Women With Polycystic Ovary Syndrome.

scientific article published on 22 June 2017

ATR (ataxia telangiectasia mutated- and Rad3-related kinase) is activated by mild hypothermia in mammalian cells and subsequently activates p53.

scientific article published in April 2011

Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach

scientific article

Adapting in vitro dual perfusion of the human placenta to soluble oxygen tensions associated with normal and pre-eclamptic pregnancy

article published in 2010

Adipose tissue and metabolic and inflammatory responses to stroke are altered in obese mice

scientific article published on 10 August 2017

Adipose tissue-specific androgen generation fuels an adverse metabolic phenotype in patients with polycystic ovary syndrome

Alterations in bone marrow metabolism are an early and consistent feature during the development of MGUS and multiple myeloma.

scientific article published on 16 October 2015

Analysis of the metabolic footprint and tissue metabolome of placental villous explants cultured at different oxygen tensions reveals novel redox biomarkers

scientific article published on 24 June 2008

Antiphospholipid Antibodies Alter Cell-Death-Regulating Lipid Metabolites in First and Third Trimester Human Placentae

scientific article published on 9 April 2015

Assessment of adaptive focused acoustics versus manual vortex/freeze-thaw for intracellular metabolite extraction from Streptomyces lividans producing recombinant proteins using GC-MS and multi-block principal component analysis

article

Assessment of human plasma and urine sample preparation for reproducible and high-throughput UHPLC-MS clinical metabolic phenotyping

scientific article published on 06 August 2020

Autocrine amplification of integrin αIIbβ3 activation and platelet adhesive responses by deoxyribose-1-phosphate

article

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets

scientific article

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets

scientific article published in 2011

Biomarkers of dietary energy restriction in women at increased risk of breast cancer.

scientific article

CASMI-The Small Molecule Identification Process from a Birmingham Perspective

scientific article published on 21 May 2013

Carbohydrate and fatty acid perturbations in the amniotic fluid of the recipient twin of pregnancies complicated by twin-twin transfusion syndrome in relation to treatment and fetal cardiovascular risk

scientific article

Changes in the cardiac metabolome caused by perhexiline treatment in a mouse model of hypertrophic cardiomyopathy

article

Changes in the metabolic footprint of placental explant-conditioned culture medium identifies metabolic disturbances related to hypoxia and pre-eclampsia.

scientific article published on 22 September 2009

Changes in the metabolic footprint of placental explant-conditioned medium cultured in different oxygen tensions from placentas of small for gestational age and normal pregnancies

scientific article published on 13 August 2010

Characterisation of the metabolome of ocular tissues and post-mortem changes in the rat retina

scientific article

Characterization of Monophasic Solvent-Based Tissue Extractions for the Detection of Polar Metabolites and Lipids Applying Ultrahigh-Performance Liquid Chromatography-Mass Spectrometry Clinical Metabolic Phenotyping Assays

scientific article published on 25 November 2020

Closed-loop, multiobjective optimization of analytical instrumentation: gas chromatography/time-of-flight mass spectrometry of the metabolomes of human serum and of yeast fermentations.

scientific article

Closed-loop, multiobjective optimization of two-dimensional gas chromatography/mass spectrometry for serum metabolomics

scientific article published in January 2007

Collection and Preparation of Clinical Samples for Metabolomics.

scientific article published in January 2017

Comparative evaluation of software for deconvolution of metabolomics data based on GC-TOF-MS

scholarly article by Hongmei Lu et al published March 2008 in Trends in Analytical Chemistry

Comparison of modified Matyash method to conventional solvent systems for polar metabolite and lipid extractions

scholarly article by Jelena Sostare et al published 11 December 2018 in Analytica Chimica Acta

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

scientific article

Considerations in Sample Preparation, Collection, and Extraction Approaches Applied in Microbial, Plant, and Mammalian Metabolic Profiling

article

Contributors

Cryptococcal 3-Hydroxy Fatty Acids Protect Cells Against Amoebal Phagocytosis.

scientific article

Current Practices in LC-MS Untargeted Metabolomics: A Scoping Review on the Use of Pooled Quality Control Samples

scientific article published in 2023

Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes

scientific article published on 20 February 2008

Detection and identification of novel metabolomic biomarkers in preeclampsia

scientific article published on 20 May 2008

Development and Performance of a Gas Chromatography−Time-of-Flight Mass Spectrometry Analysis for Large-Scale Nontargeted Metabolomic Studies of Human Serum

article

Development of a robust and repeatable UPLC-MS method for the long-term metabolomic study of human serum

scientific article

Diabetes - the Role of Metabolomics in the Discovery of New Mechanisms and Novel Biomarkers

Dissemination and analysis of the quality assurance (QA) and quality control (QC) practices of LC-MS based untargeted metabolomics practitioners

scientific article published on 12 October 2020

Dual-5α-Reductase Inhibition Promotes Hepatic Lipid Accumulation in Man

scientific article

Dupuytren's disease metabolite analyses reveals alterations following initial short-term fibroblast culturing

scientific article published on 6 July 2012

Effective quenching processes for physiologically valid metabolite profiling of suspension cultured Mammalian cells

scientific article

Erratum to: A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications

article

Evidence that multiple defects in lipid regulation occur before hyperglycemia during the prodrome of type-2 diabetes.

scientific article

Exploring the mode of action of dithranol therapy for psoriasis: a metabolomic analysis using HaCaT cells

scientific article published on July 2015

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

scientific article published on 28 January 2011

Fingerprinting food: current technologies for the detection of food adulteration and contamination

scientific article

Fit-for-Purpose Quenching and Extraction Protocols for Metabolic Profiling of Yeast Using Chromatography-Mass Spectrometry Platforms

article

From genomes to systems

scientific article

Further developments towards a genome-scale metabolic model of yeast

scientific article (publication date: 28 October 2010)

Genomics in cardiac metabolism.

scientific article published on 07 March 2008

Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites.

scientific article

Growth control of the eukaryote cell: a systems biology study in yeast ⬇️

scientific article (publication date: 2007)

Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies.

scientific article

HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries

scientific article

How close are we to complete annotation of metabolomes?

scientific article published on 20 January 2017

Huntington disease patients and transgenic mice have similar pro-catabolic serum metabolite profiles

scientific article published on 7 February 2006

Improving metabolic flux predictions using absolute gene expression data

scientific article

Integration of metabolomics in heart disease and diabetes research: current achievements and future outlook

scientific article published on October 2011

Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics.

scientific article

International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis

scientific article published on 08 November 2019

Investigation of the 12-Month Stability of Dried Blood and Urine Spots Applying Untargeted UHPLC-MS Metabolomic Assays

scientific article published on 29 October 2019

Is Serum or Plasma More Appropriate for Intersubject Comparisons in Metabolomic Studies? An Assessment in Patients with Small-Cell Lung Cancer

article

Liquid chromatography-mass spectrometry calibration transfer and metabolomics data fusion

scientific article

MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis.

scientific article published on 11 November 2014

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

scientific article (publication date: 26 May 2012)

Mass spectrometry and metabolomics: past, present and future

Mass spectrometry in systems biology an introduction

scientific article

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics

scientific article

Measuring the metabolome: current analytical technologies

scientific article

Metabolic Dysfunction Is Restricted to the Sciatic Nerve in Experimental Diabetic Neuropathy

scientific article published on 15 October 2015

Metabolic fingerprinting as a diagnostic tool.

scientific article

Metabolic footprinting and systems biology: the medium is the message

scientific article

Metabolic footprinting as a tool for discriminating between brewing yeasts

article

Metabolic profiling of meat: assessment of pork hygiene and contamination with Salmonella typhimurium

scientific article published on 29 November 2010

Metabolic profiling of serum using Ultra Performance Liquid Chromatography and the LTQ-Orbitrap mass spectrometry system

scientific article

Metabolic profiling reveals potential metabolic markers associated with Hypoxia Inducible Factor-mediated signalling in hypoxic cancer cells

scientific article

Metabolic profiling uncovers a phenotypic signature of small for gestational age in early pregnancy

scientific article

Metabolite identification: are you sure? And how do your peers gauge your confidence?

article

Metabolite profiles of interacting mycelial fronts differ for pairings of the wood decay basidiomycete fungus, Stereum hirsutum with its competitors Coprinus micaceus and Coprinus disseminatus

article

Metabolites involved in glycolysis and amino acid metabolism are altered in short children born small for gestational age.

scientific article published on 08 April 2016

Metabolomic analyses show that electron donor and acceptor ratios control anaerobic electron transfer pathways in Shewanella oneidensis

Metabolomic analysis of rat serum in streptozotocin-induced diabetes and after treatment with oral triethylenetetramine (TETA).

scientific article published on 30 April 2012

Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea

article

Metabolomics Society Board election 2014: introduction of the new officers and directors

Metabolomics and Its Role in the Study of Mammalian Systems

article published in 2013

Metabolomics by numbers: acquiring and understanding global metabolite data

scientific article

Metabolomics enables precision medicine: "A White Paper, Community Perspective"

scientific article

Metabolomics reveals the physiological response of Pseudomonas putida KT2440 (UWC1) after pharmaceutical exposure

scientific article published on 2 March 2016

Molecular phenotyping of a UK population: defining the human serum metabolome

scientific article

Non-targeted UHPLC-MS metabolomic data processing methods: a comparative investigation of normalisation, missing value imputation, transformation and scaling

scientific article

Novel biomarkers for pre-eclampsia detected using metabolomics and machine learning

scholarly article by Louise C. Kenny et al published July 2005 in Metabolomics

Novel techniques for the off-line analysis of liquid process streams by mass spectrometry

Paracrine stimulation of endothelial cell motility and angiogenesis by platelet-derived deoxyribose-1-phosphate

scientific article published on 30 September 2010

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

article

Profiling of spatial metabolite distributions in wheat leaves under normal and nitrate limiting conditions.

scientific article published on 10 February 2015

Proof-of-principle study to detect metabolic changes in peritoneal dialysis effluent in patients who develop encapsulating peritoneal sclerosis

article

Quality assurance and quality control processes: summary of a metabolomics community questionnaire

Relatedness of medically important strains of Saccharomyces cerevisiae as revealed by phylogenetics and metabolomics

scientific article published in July 2008

Review: The effects of oxygen on normal and pre-eclamptic placental tissue--insights from metabolomics.

scientific article published on 30 December 2010

Robust early pregnancy prediction of later preeclampsia using metabolomic biomarkers

scientific article published in October 2010

Sample Preparation Related to the Intracellular Metabolome of Yeast

Serum metabolomics reveals many novel metabolic markers of heart failure, including pseudouridine and 2-oxoglutarate

article by Warwick Dunn et al published 28 June 2007 in Metabolomics

Short- and long-term dynamic responses of the metabolic network and gene expression in yeast to a transient change in the nutrient environment

scientific article

Systematic integration of experimental data and models in systems biology ⬇️

scientific article (publication date: 29 November 2010)

Systems biology: the elements and principles of life

scientific article published on December 2009

Systems level studies of mammalian metabolomes: the roles of mass spectrometry and nuclear magnetic resonance spectroscopy

scientific article published on 17 August 2010

TARDIS-based microbial metabolomics: time and relative differences in systems

scientific article published on 12 June 2011

The future of metabolomics in ELIXIR.

scientific article

The importance of experimental design and QC samples in large-scale and MS-driven untargeted metabolomic studies of humans

scientific article published on September 2012

The metabolome of human placental tissue: investigation of first trimester tissue and changes related to preeclampsia in late pregnancy

article by Warwick Dunn et al published 18 August 2011 in Metabolomics

The potential of on-line headspace analysis of liquid streams using direct mass spectrometry detection

The role of metabolites and metabolomics in clinically applicable biomarkers of disease.

scientific article published on 16 October 2010

The role of reporting standards for metabolite annotation and identification in metabolomic studies

scientific article published on 16 October 2013

Training needs in metabolomics

scientific article published on 29 May 2015

Transcriptional and metabolic response of Saccharomyces cerevisiae to a nutritional perturbation when under stress

Untargeted metabolic profiling identifies altered serum metabolites of type 2 diabetes mellitus in a prospective, nested case control study

article by Dagmar Drogan et al published March 2015 in Clinical Chemistry

Yeast cells with impaired drug resistance accumulate glycerol and glucose.

scientific article published in January 2014

msPurity: Automated Evaluation of Precursor Ion Purity for Mass Spectrometry-Based Fragmentation in Metabolomics

scientific article

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