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List of works by Fumiaki Katagiri

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

scientific article

A global view of defense gene expression regulation--a highly interconnected signaling network

scientific article published in October 2004

A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies

scientific article published on 20 December 2006

A high-throughput Arabidopsis reverse genetics system

scientific article

A plant DNA-binding protein increases the number of active preinitiation complexes in a human in vitro transcription system.

scientific article

A plant effector-triggered immunity signaling sector is inhibited by pattern-triggered immunity.

scientific article

A putative RNA-binding protein positively regulates salicylic acid-mediated immunity in Arabidopsis

scientific article published on December 2010

A resistance gene product of the nucleotide binding site -- leucine rich repeats class can form a complex with bacterial avirulence proteins in vivo.

scientific article

Activation of the Arabidopsis thaliana mitogen-activated protein kinase MPK11 by the flagellin-derived elicitor peptide, flg22.

scientific article published on April 2012

An efficient Agrobacterium-mediated transient transformation of Arabidopsis

scientific article published on 17 November 2011

An octopine synthase enhancer element directs tissue-specific expression and binds ASF-1, a factor from tobacco nuclear extracts

scientific article published on 01 October 1989

Arabidopsis CaM binding protein CBP60g contributes to MAMP-induced SA accumulation and is involved in disease resistance against Pseudomonas syringae

scientific article

Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae.

scientific article

Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection

scientific article published on 21 November 2011

Arabidopsis mutations at the RPS2 locus result in loss of resistance to Pseudomonas syringae strains expressing the avirulence gene avrRpt2.

scientific article

Attacking complex problems with the power of systems biology

scientific article published in June 2003

BR-SIGNALING KINASE1 physically associates with FLAGELLIN SENSING2 and regulates plant innate immunity in Arabidopsis

scientific article published on 26 March 2013

CBP60g and SARD1 play partially redundant critical roles in salicylic acid signaling

scientific article published on 06 July 2011

Characterization of nodule-specific cDNA clones from Sesbania rostrata and expression of the corresponding genes during the initial stages of stem nodules and root nodules formation.

scientific article

Cleavage of the Pseudomonas syringae type III effector AvrRpt2 requires a host factor(s) common among eukaryotes and is important for AvrRpt2 localization in the host cell.

scientific article

Cloning of phosphoenolpyruvate carboxylase gene from a cyanobacterium, Anacystis nidulans, in Escherichia coli

scientific article published in February 1985

Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity.

scientific article published on 12 May 2010

Comparison of amino acid sequences between phosphoenolpyruvate carboxylases from Escherichia coli (allosteric) and Anacystis nidulans (non-allosteric): identification of conserved and variable regions.

scientific article

Design and construction of an inexpensive homemade plant growth chamber

scientific article published on 12 May 2015

Different modes of negative regulation of plant immunity by calmodulin-related genes

scientific article published on 15 February 2018

Direct delivery of bacterial avirulence proteins into resistant Arabidopsis protoplasts leads to hypersensitive cell death

scientific article published in January 2003

Dual regulation of gene expression mediated by extended MAPK activation and salicylic acid contributes to robust innate immunity in Arabidopsis thaliana

scientific article

Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco

scientific article published on 23 March 2010

Environmental Association Identifies Candidates for Tolerance to Low Temperature and Drought

scientific article published on 07 October 2019

Eukaryotic Fatty Acylation Drives Plasma Membrane Targeting and Enhances Function of Several Type III Effector Proteins from Pseudomonas syringae

scientific article published on 01 May 2000

Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.

scientific article

Expression profiles as detailed snapshots of biological states

scientific article published on 5 June 2007

Foundational and Translational Research Opportunities to Improve Plant Health.

scientific article

How might highly resilient plant immunity have evolved? A “multiverse” hypothesis

scientific article published in 2023

Identification and utilization of a sow thistle powdery mildew as a poorly adapted pathogen to dissect post-invasion non-host resistance mechanisms in Arabidopsis.

scientific article

Identification of differentially expressed genes between developing seeds of different soybean cultivars

scientific article published on 13 August 2015

Interplay between MAMP-triggered and SA-mediated defense responses

scientific article published on 14 November 2007

Involvement of Adapter Protein Complex 4 in Hypersensitive Cell Death Induced by Avirulent Bacteria.

scientific article

Local Context Finder (LCF) reveals multidimensional relationships among mRNA expression profiles of Arabidopsis responding to pathogen infection

scientific article

Mechanisms underlying robustness and tunability in a plant immune signaling network

scientific article

Membrane microdomain may be a platform for immune signaling ⬇️

scientific article published on April 1, 2012

Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid

scientific article published on 13 July 2007

Natural variation in RPS2-mediated resistance among Arabidopsis accessions: correlation between gene expression profiles and phenotypic responses.

scientific article published on 14 December 2007

Network Reconstitution for Quantitative Subnetwork Interaction Analysis.

scientific article published on January 2017

Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling

scientific article

Network properties of robust immunity in plants

scientific article

Nucleotide sequence of the phosphoenolpyruvate carboxylase gene of the cyanobacterium Anacystis nidulans

scientific article published in January 1985

Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana

scientific article published on 10 January 2017

Overview of mRNA expression profiling using DNA microarrays.

scientific article published in January 2009

Overview of mRNA expression profiling using microarrays

scientific article published on 01 September 2004

Pattern Discovery in Expression Profiling Data

scientific article published on 01 January 2009

Pattern discovery in expression profiling data.

scientific article

Pattern-triggered immunity suppresses programmed cell death triggered by fumonisin b1

scientific article

Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana. ⬇️

scientific article published on 26 January 2016

Physical association of Arabidopsis hypersensitive induced reaction proteins (HIRs) with the immune receptor RPS2.

scientific article

Physical association of pattern‐triggered immunity (PTI) and effector‐triggered immunity (ETI) immune receptors in Arabidopsis ⬇️

scientific article published on February 17, 2011

Plant transcription factors: present knowledge and future challenges

scientific article published on January 1, 1992

PlantSimLab - a modeling and simulation web tool for plant biologists

scientific article published on 21 October 2019

Purification of Resistance Protein Complexes Using a Biotinylated Affinity (HPB) Tag ⬇️

scientific article published on 01 January 2011

Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components

scientific article

Putative Serine Protease Effectors of Clavibacter michiganensis Induce a Hypersensitive Response in the Apoplast of Nicotiana Species.

scientific article

Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae

scientific article

Review: Plant immune signaling from a network perspective

article

Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes

scientific article

TGA1a, a tobacco DNA-binding protein, increases the rate of preinitiation complex formation in a plant in vitro transcription system [corrected].

scientific article

The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats

scientific article published in September 1994

The Arabidopsis thaliana-pseudomonas syringae interaction

scientific article published on 27 March 2002

The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity

scientific article published on 17 October 2013

The Pseudomonas syringae avrRpt2 gene product promotes pathogen virulence from inside plant cells.

scientific article

The genetic network controlling the Arabidopsis transcriptional response to Pseudomonas syringae pv. maculicola: roles of major regulators and the phytotoxin coronatine

scientific article

The highly buffered Arabidopsis immune signaling network conceals the functions of its components

scientific article

The peptide growth factor, phytosulfokine, attenuates pattern-triggered immunity

scientific article published on 14 May 2012

The promoter of the rice gene GOS2 is active in various different monocot tissues and binds rice nuclear factor ASF-1.

scientific article published in November 1992

The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.

scientific article published on 25 February 2015

The tobacco transcription activator TGA1a binds to a sequence in the 5' upstream region of a gene encoding a TGA1a-related protein

scientific article published in October 1991

The μ Subunit of Arabidopsis Adaptor Protein-2 Is Involved in Effector-Triggered Immunity Mediated by Membrane-Localized Resistance Proteins.

scientific article published in February 2016

Tissue-Specific Expression of as-1 in Transgenic Tobacco

scientific article published on 01 June 1994

Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping

scientific article published in April 2003

Transient Expression in Protoplasts ⬇️

scientific article published on 01 February 2007

Two tobacco DNA-binding proteins with homology to the nuclear factor CREB

scientific article published in Nature

Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method

scientific article

Use of Arabidopsis thaliana defense-related mutants to dissect the plant response to pathogens

scientific article

Utilizing whole genome sequences to study population genomics of gene networks: a case study of the Arabidopsis thaliana immune-signaling network

scientific article published on 19 September 2011

WRKY70 prevents axenic activation of plant immunity by direct repression of SARD1.

scientific article

[How do disease resistance genes function?]

scientific article published on 01 November 1999

[System control in plant defense implicated by expression profiles during pathogen infection]

scientific article published on 01 May 2007

bZIP proteins bind to a palindromic sequence without an ACGT core located in a seed-specific element of the pea lectin promoter

scientific article published in August 1994

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