List of works - Ozlem Tastan Bishop

A new approach to possible substrate binding mechanisms for nitrile hydratase

scientific article published on 6 March 2006

Allosteric Modulation of Human Hsp90α Conformational Dynamics

scientific article published on 29 January 2018

Alpha-Carbonic Anhydrases from Hydrothermal Vent Sources as Potential Carbon Dioxide Sequestration Agents: In Silico Sequence, Structure and Dynamics Analyses

scientific article published on 29 October 2020

Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study

scholarly article published 11 October 2018

Aminoacyl tRNA synthetases as malarial drug targets: a comparative bioinformatics study

scholarly article by Dorothy Wavinya Nyamai & Ozlem Tastan Bishop published 6 February 2019 in Malaria Journal

Analysis of non-peptidic compounds as potential malarial inhibitors against Plasmodial cysteine proteases via integrated virtual screening workflow

scientific article published on 15 October 2015

Analysis of protein thermostability enhancing factors in industrially important thermus bacteria species

scientific article published on 18 August 2013

Anti-HIV-1 integrase potency of methylgallate from Alchornea cordifolia using in vitro and in silico approaches

article

Bioinformatic characterization of type-specific sequence and structural features in auxiliary activity family 9 proteins

scientific article published in 2016

Bioinformatics education--perspectives and challenges out of Africa

scientific article

Characterisation of plasmodial transketolases and identification of potential inhibitors: an in silico study

scientific article published on 30 November 2020

Characterizing drug resistance using geometric ensembles from HIV protease dynamics

article

Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics

scientific article published in Scientific Reports

Comparative structural bioinformatics analysis of Bacillus amyloliquefaciens chemotaxis proteins within Bacillus subtilis group

scientific article published on 13 October 2011

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide based inhibitor design

scientific article published on 03 May 2019

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide-based inhibitor design

scholarly article published 1 August 2018

Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop

scientific article

Deciphering Isoniazid Drug Resistance Mechanisms on Dimeric <i>Mycobacterium tuberculosis</i> KatG via Post-molecular Dynamics Analyses Including Combined Dynamic Residue Network Metrics

scientific article published on 07 April 2022

Development of Bioinformatics Infrastructure for Genomics Research in H3Africa.

scientific article published on 13 March 2017

Discorhabdin N, a South African Natural Compound, for Hsp72 and Hsc70 Allosteric Modulation: Combined Study of Molecular Modeling and Dynamic Residue Network Analysis

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s

scientific article published on 08 November 2019

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

scientific article

HUMA: A platform for the analysis of genetic variation in humans

scientific article

Homology modeling and docking of AahII-Nanobody complexes reveal the epitope binding site on AahII scorpion toxin

scientific article published on 27 January 2018

How to establish a bioinformatics postgraduate degree programme--a case study from South Africa

scientific article published on 2 May 2014

Human, vector and parasite Hsp90 proteins: A comparative bioinformatics analysis.

scientific article

Identification of Novel Potential Inhibitors of Pteridine Reductase 1 in via Computational Structure-Based Approaches and in Vitro Inhibition Assays

article published in 2019

Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches

scientific article published on 27 May 2020

Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks.

scientific article published on 15 August 2017

In Silico Investigation of Potential Applications of Gamma Carbonic Anhydrases as Catalysts of CO2 Biomineralization Processes: A Visit to the Thermophilic Bacteria Persephonella hydrogeniphila, Persephonella marina, Thermosulfidibacter takaii, and

scientific article published in 2021

Integrated Computational Approaches and Tools forAllosteric Drug Discovery

scientific article published on 28 January 2020

Interacting motif networks located in hotspots associated with RNA release are conserved in Enterovirus capsids

scientific article published on 4 May 2017

MD-TASK: a software suite for analyzing molecular dynamics trajectories

scientific article

MODE-TASK: Large-scale protein motion tools

MODE-TASK: large-scale protein motion tools

scholarly article by Caroline Ross published in November 2018

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

article

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

scientific article published in Scientific Reports

No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations

scientific article published on 22 February 2018

No evidence for association with APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations

scholarly article published 25 August 2017

Oral Phyto-thymol ameliorates the stress induced IBS symptoms

scientific article published on 17 August 2020

PRIMO: An Interactive Homology Modeling Pipeline

scientific article

Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70.

scientific article published on 15 May 2017

Plasmodium falciparum Hop: detailed analysis on complex formation with Hsp70 and Hsp90.

scientific article

Plasmodium falciparum Hsp70-x: a heat shock protein at the host-parasite interface

scientific article (publication date: 2014)

Rearrangement of the 16S precursor subunits is essential for the formation of the active 20S proteasome

scientific article

Research capacity. Enabling the genomic revolution in Africa

scientific article published in June 2014

Role of Structural Bioinformatics in Drug Discovery by Computational SNP Analysis: Analyzing Variation at the Protein Level

scientific article published on 13 March 2017

SANCDB: a South African natural compound database

scientific article (publication date: 2015)

Sequence and domain conservation of the coelacanth Hsp40 and Hsp90 chaperones suggests conservation of function

scientific article published on 17 September 2013

South African Abietane Diterpenoids and Their Analogs as Potential Antimalarials: Novel Insights from Hybrid Computational Approaches

scientific article published on 07 November 2019

Structural Characterization of Carbonic Anhydrase VIII and Effects of Missense Single Nucleotide Variations to Protein Structure and Function

scientific article published on 16 April 2020

Structural and Functional Annotation of Hypothetical Proteins from the Microsporidia Species Vittaforma corneae ATCC 50505 Using in silico Approaches

scientific article published in 2023

Structure Based Docking and Molecular Dynamic Studies of Plasmodial Cysteine Proteases against a South African Natural Compound and its Analogs

scientific article

Structure-Based Analysis of Single Nucleotide Variants in the Renin-Angiotensinogen Complex.

scientific article published on 13 March 2017

Study of protein complexes via homology modeling, applied to cysteine proteases and their protein inhibitors

scientific article published on 2 March 2011

Subcellular localisation of Theiler's murine encephalomyelitis virus (TMEV) capsid subunit VP1 vis-á-vis host protein Hsp90.

scientific article published on 3 June 2016

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

scientific article published on 4 February 2016

The In Silico Prediction of Hotspot Residues that Contribute to the Structural Stability of Subunit Interfaces of a Picornavirus Capsid

scientific article published on 31 March 2020

The evaluation and validation of copper (II) force field parameters of the Auxiliary Activity family 9 enzymes

The generation and characterisation of neutralising antibodies against the Theiler's murine encephalomyelitis virus (TMEV) GDVII capsid reveals the potential binding site of the host cell co-receptor, heparan sulfate

scientific article published on 16 November 2017

The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1.

scientific article published on 09 January 2017

Understanding the Pyrimethamine Drug Resistance Mechanism via Combined Molecular Dynamics and Dynamic Residue Network Analysis

scientific article published on 18 February 2020

Unraveling the Motions behind Enterovirus 71 Uncoating.

scientific article published in February 2018

X-ray Structure, Bioinformatics Analysis, and Substrate Specificity of a 6-Phospho-β-glucosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis

scientific article published on 09 November 2020

List of works by Ozlem Tastan Bishop

A new approach to possible substrate binding mechanisms for nitrile hydratase

Allosteric Modulation of Human Hsp90α Conformational Dynamics

Alpha-Carbonic Anhydrases from Hydrothermal Vent Sources as Potential Carbon Dioxide Sequestration Agents: In Silico Sequence, Structure and Dynamics Analyses

Aminoacyl tRNA Synthetases as Malarial Drug Targets: A Comparative Bioinformatics Study

Aminoacyl tRNA synthetases as malarial drug targets: a comparative bioinformatics study

Analysis of non-peptidic compounds as potential malarial inhibitors against Plasmodial cysteine proteases via integrated virtual screening workflow

Analysis of protein thermostability enhancing factors in industrially important thermus bacteria species

Anti-HIV-1 integrase potency of methylgallate from Alchornea cordifolia using in vitro and in silico approaches

Bioinformatic characterization of type-specific sequence and structural features in auxiliary activity family 9 proteins

Bioinformatics education--perspectives and challenges out of Africa

Characterisation of plasmodial transketolases and identification of potential inhibitors: an in silico study

Characterizing drug resistance using geometric ensembles from HIV protease dynamics

Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics

Comparative structural bioinformatics analysis of Bacillus amyloliquefaciens chemotaxis proteins within Bacillus subtilis group

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide based inhibitor design

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide-based inhibitor design

Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop

Deciphering Isoniazid Drug Resistance Mechanisms on Dimeric <i>Mycobacterium tuberculosis</i> KatG via Post-molecular Dynamics Analyses Including Combined Dynamic Residue Network Metrics

Development of Bioinformatics Infrastructure for Genomics Research in H3Africa.

Discorhabdin N, a South African Natural Compound, for Hsp72 and Hsc70 Allosteric Modulation: Combined Study of Molecular Modeling and Dynamic Residue Network Analysis

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

HUMA: A platform for the analysis of genetic variation in humans

Homology modeling and docking of AahII-Nanobody complexes reveal the epitope binding site on AahII scorpion toxin

How to establish a bioinformatics postgraduate degree programme--a case study from South Africa

Human, vector and parasite Hsp90 proteins: A comparative bioinformatics analysis.

Identification of Novel Potential Inhibitors of Pteridine Reductase 1 in via Computational Structure-Based Approaches and in Vitro Inhibition Assays

Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches

Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks.

In Silico Investigation of Potential Applications of Gamma Carbonic Anhydrases as Catalysts of CO2 Biomineralization Processes: A Visit to the Thermophilic Bacteria Persephonella hydrogeniphila, Persephonella marina, Thermosulfidibacter takaii, and

Integrated Computational Approaches and Tools forAllosteric Drug Discovery

Interacting motif networks located in hotspots associated with RNA release are conserved in Enterovirus capsids

MD-TASK: a software suite for analyzing molecular dynamics trajectories

MODE-TASK: Large-scale protein motion tools

MODE-TASK: large-scale protein motion tools

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations

No evidence for association with APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations

Oral Phyto-thymol ameliorates the stress induced IBS symptoms

PRIMO: An Interactive Homology Modeling Pipeline

Perturbation-Response Scanning Reveals Key Residues for Allosteric Control in Hsp70.

Plasmodium falciparum Hop: detailed analysis on complex formation with Hsp70 and Hsp90.

Plasmodium falciparum Hsp70-x: a heat shock protein at the host-parasite interface

Rearrangement of the 16S precursor subunits is essential for the formation of the active 20S proteasome

Research capacity. Enabling the genomic revolution in Africa

Role of Structural Bioinformatics in Drug Discovery by Computational SNP Analysis: Analyzing Variation at the Protein Level

SANCDB: a South African natural compound database

Sequence and domain conservation of the coelacanth Hsp40 and Hsp90 chaperones suggests conservation of function

South African Abietane Diterpenoids and Their Analogs as Potential Antimalarials: Novel Insights from Hybrid Computational Approaches

Structural Characterization of Carbonic Anhydrase VIII and Effects of Missense Single Nucleotide Variations to Protein Structure and Function

Structural and Functional Annotation of Hypothetical Proteins from the Microsporidia Species Vittaforma corneae ATCC 50505 Using in silico Approaches

Structure Based Docking and Molecular Dynamic Studies of Plasmodial Cysteine Proteases against a South African Natural Compound and its Analogs

Structure-Based Analysis of Single Nucleotide Variants in the Renin-Angiotensinogen Complex.

Study of protein complexes via homology modeling, applied to cysteine proteases and their protein inhibitors

Subcellular localisation of Theiler's murine encephalomyelitis virus (TMEV) capsid subunit VP1 vis-á-vis host protein Hsp90.

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

The In Silico Prediction of Hotspot Residues that Contribute to the Structural Stability of Subunit Interfaces of a Picornavirus Capsid

The evaluation and validation of copper (II) force field parameters of the Auxiliary Activity family 9 enzymes

The generation and characterisation of neutralising antibodies against the Theiler's murine encephalomyelitis virus (TMEV) GDVII capsid reveals the potential binding site of the host cell co-receptor, heparan sulfate

The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1.

Understanding the Pyrimethamine Drug Resistance Mechanism via Combined Molecular Dynamics and Dynamic Residue Network Analysis

Unraveling the Motions behind Enterovirus 71 Uncoating.

X-ray Structure, Bioinformatics Analysis, and Substrate Specificity of a 6-Phospho-β-glucosidase Glycoside Hydrolase 1 Enzyme from Bacillus licheniformis