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List of works by Andrés Legarra

A combined coalescence gene-dropping tool for evaluating genomic selection in complex scenarios (ms2gs).

scientific article

A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species.

scientific article

A comparison of methods to estimate genomic relationships using pedigree and markers in livestock populations.

scientific article

A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle.

scientific article published in April 2012

A fast indirect method to compute functions of genomic relationships concerning genotyped and ungenotyped individuals, for diversity management

scientific article published in December 2017

A genome scan for QTL affecting resistance to Haemonchus contortus in sheep.

scientific article published on 5 July 2012

A note on the rationale for estimating genealogical coancestry from molecular markers

scientific article published on 12 July 2011

Accuracy of estimated breeding values with genomic information on males, females, or both: an example on broiler chicken

scientific article published on 2 July 2015

Alternative SNP weighting for single-step genomic best linear unbiased predictor evaluation of stature in US Holsteins in the presence of selected sequence variants

scientific article published on 05 September 2019

Ancestral Relationships Using Metafounders: Finite Ancestral Populations and Across Population Relationships

scientific article published on 14 April 2015

Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds.

scientific article published on 3 November 2012

Assessment of accuracy of genomic prediction for French Lacaune dairy sheep.

scientific article published on 6 December 2013

Behavior of the Linear Regression method to estimate bias and accuracies with correct and incorrect genetic evaluation models

scientific article published on 06 November 2019

Comparing estimates of genetic variance across different relationship models.

scientific article published on September 2015

Computation of deregressed proofs for genomic selection when own phenotypes exist with an application in French show-jumping horses

scientific article published on 10 December 2012

Computational strategies for national integration of phenotypic, genomic, and pedigree data in a single-step best linear unbiased prediction

scientific article

Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

scientific article published on 22 November 2019

Detection of unrecorded environmental challenges in high-frequency recorded traits, and genetic determinism of resilience to challenge, with an application on feed intake in lambs

scientific article published in 2021

Differences between genomic-based and pedigree-based relationships in a chicken population, as a function of quality control and pedigree links among individuals

scientific article published on 15 July 2014

Economic weights of fertility, prolificacy, milk yield and longevity in dairy sheep

scientific article published on 01 March 2007

Economic weights of somatic cell score in dairy sheep

scientific article published on 01 March 2007

Effects of ignoring inbreeding in model-based accuracy for BLUP and SSGBLUP

scientific article published on 20 February 2020

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

scientific article published on 2 December 2016

Exploring the inclusion of genomic information and metafounders in Latxa dairy sheep genetic evaluations

scientific article published on 29 April 2020

Fine-mapping quantitative trait loci with a medium density marker panel: efficiency of population structures and comparison of linkage disequilibrium linkage analysis models ⬇️

scientific article published on August 1, 2012

Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle.

scientific article

GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait.

scientific article

Genetic basis of semen traits and their relationship with growth rate in rabbits

scientific article published on 18 November 2011

Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP.

scientific article published on 17 November 2015

Genetic parameters for growth and faecal worm egg count following Haemonchus contortus experimental infestations using pedigree and molecular information

scientific article published on 14 February 2014

Genome-wide association mapping including phenotypes from relatives without genotypes

scientific article published in April 2012

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens.

scientific article

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs.

scientific article published on 29 January 2016

Genomic Model with Correlation Between Additive and Dominance Effects

scientific article published on 09 May 2018

Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle.

scientific article

Genomic selection in the French Lacaune dairy sheep breed.

scientific article

Hot topic: Use of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) with a large number of genotypes

scientific article published on 8 April 2015

Implementation of genomic recursions in single-step genomic best linear unbiased predictor for US Holsteins with a large number of genotyped animals.

scientific article

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels

scientific article

Joint genomic evaluation of French dairy cattle breeds using multiple-trait models.

scientific article published on 7 December 2012

LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces.

scientific article published on 23 January 2012

Metafounders are Fst fixation indices and reduce bias in single step genomic evaluations

article

Metafounders are related to F st fixation indices and reduce bias in single-step genomic evaluations

scientific article

Methods to approximate reliabilities in single-step genomic evaluation.

scientific article published on 3 November 2012

Multi-breed genetic evaluation in a Gelbvieh population.

scientific article published in October 2007

Multibreed genomic evaluation for production traits of dairy cattle in the United States using single-step genomic best linear unbiased predictor

scientific article published in 2022

On the additive and dominant variance and covariance of individuals within the genomic selection scope

scientific article published on 11 October 2013

Pedigree and genomic evaluation of pigs using a terminal-cross model

scientific article published on 7 April 2016

Pedigree-based estimation of covariance between dominance deviations and additive genetic effects in closed rabbit lines considering inbreeding and using a computationally simpler equivalent model

scientific article published on June 2017

Quality control of genotypes using heritability estimates of gene content at the marker

scientific article published on 6 January 2015

Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions

scientific article published in 2022

Role of inbreeding depression, non-inbred dominance deviations and random year-season effect in genetic trends for prolificacy in closed rabbit lines.

scientific article

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

article

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

scientific article published on 9 May 2015

Short communication: Accounting for new mutations in genomic prediction models

scientific article published on 5 June 2013

Short communication: Methods to compute genomic inbreeding for ungenotyped individuals

scientific article published on 11 February 2020

Single-marker and multi-marker mixed models for polygenic score analysis in family-based data

scientific article

The Dimensionality of Genomic Information and Its Effect on Genomic Prediction

scientific article published on 4 March 2016

The coefficient of dominance is not (always) estimable with biallelic markers

scientific article published on 08 January 2014

Unknown-parent groups in single-step genomic evaluation.

scientific article published on 17 January 2013

Using recursion to compute the inverse of the genomic relationship matrix.

scientific article published on 27 March 2014

Variance and covariance of actual relationships between relatives at one locus

scientific article

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS

scientific article published on 19 August 2016

Within- and across-breed genomic predictions and genomic relationships for Western Pyrenees dairy sheep breeds Latxa, Manech, and Basco-Béarnaise

scientific article published on 13 March 2014

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