List of works - Alberto Paradela

A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens

scientific article published on 05 December 2016

A Multi-Centric Study To Assess Reproducibility of Protein Quantification By SRM LC-MS Proteomic Analysis

scientific article published in January 2012

A multicentric study to evaluate the use of relative retention times in targeted proteomics.

scientific article published on 29 October 2016

A systematic approach to assess amino acid conversions in SILAC experiments.

scientific article published on 26 January 2011

Advances in the analysis of protein phosphorylation.

scientific article published on 08 March 2008

B2707 differs in peptide specificity from B2705 and B*2704 as much as from HLA-B27 subtypes not associated to spondyloarthritis.

scientific article published on July 2006

Blockade of the trans-sulfuration pathway in acute pancreatitis due to nitration of cystathionine β-synthase

scientific article published on 08 September 2019

Comparative Analysis of the Endogenous Peptidomes Displayed by HLA-B27 and Mamu-B08: Two MHC Class I Alleles Associated with Elite Control of HIV/SIV Infection

scientific article published on 26 January 2016

Cryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes

scientific article published on 10 May 2019

Datasets for transcriptomics, q-proteomics and phenotype microarrays of polyphosphate metabolism mutants from Escherichia coli.

scientific article

Differential association of HLA-B2705 and B2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability

scientific article

Differential cleavage of lysyl oxidase by the metalloproteinases BMP1 and ADAMTS2/14 regulates collagen binding through a tyrosine sulfate domain

scientific article published on 31 May 2019

Effect of Infliximab in oxidised serum albumin levels during experimental colitis

scientific article

Evaluation of isotope-coded protein labeling (ICPL) in the quantitative analysis of complex proteomes

scientific article published on 9 July 2009

Expression of an optimized Argopecten purpuratus antimicrobial peptide in E. coli and evaluation of the purified recombinant protein by in vitro challenges against important plant fungi.

scientific article

Generalized method for probability-based peptide and protein identification from tandem mass spectrometry data and sequence database searching

scientific article

Geographical focus. Proteomics initiatives in Spain: ProteoRed

scientific article published on 01 September 2006

Global effect of the lack of inorganic polyphosphate in the extremophilic archaeon Sulfolobus solfataricus: A proteomic approach

scientific article published on 01 March 2018

Global response of Acidithiobacillus ferrooxidans ATCC 53993 to high concentrations of copper: A quantitative proteomics approach

scientific article published on 11 April 2016

Growth of Acidithiobacillus Ferrooxidans ATCC 23270 in Thiosulfate Under Oxygen-Limiting Conditions Generates Extracellular Sulfur Globules by Means of a Secreted Tetrathionate Hydrolase ⬇️

scientific article published on April 18, 2011

Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

scientific article published on 14 March 2013

HLA-B27: a registry of constitutive peptide ligands.

scientific article published on May 2004

Helicobacter pylori exhibits a fur-dependent acid tolerance response

scientific article published in June 2011

Immobilized metal affinity chromatography/reversed-phase enrichment of phosphopeptides and analysis by CID/ETD tandem mass spectrometry

scientific article published on 01 January 2011

In-Depth Proteomic Characterization of Classical and Non-Classical Monocyte Subsets.

scientific article

Incomplete tyrosine 1680 sulphation in recombinant FVIII concentrates

scientific article published on 7 February 2011

Inverse regulation in the metabolic genes pckA and metE revealed by proteomic analysis of the Salmonella RcsCDB regulon

scientific article

Juan Pablo Albar (1953-2014).

scientific article published in February 2015

Liver cancer-associated changes to the proteome: what deserves clinical focus?

scientific article published on 19 September 2018

Modulation at multiple anchor positions of the peptide specificity of HLA-B27 subtypes differentially associated with ankylosing spondylitis

scientific article published on 01 September 1999

Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton

scientific article

Multi-level evaluation of Escherichia coli polyphosphate related mutants using global transcriptomic, proteomic and phenomic analyses

scientific article published on 6 January 2017

Multicentric study of the effect of pre-analytical variables in the quality of plasma samples stored in biobanks using different complementary proteomic methods.

scientific article published on 9 September 2016

New copper resistance determinants in the extremophile acidithiobacillus ferrooxidans: a quantitative proteomic analysis

scientific article published on 8 January 2014

New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study

scientific article

Peptide presentation to an alloreactive CTL clone is modulated through multiple mechanisms involving polymorphic and conserved residues in HLA-B27.

scientific article

Peptide rearrangement during quadrupole ion trap fragmentation: added complexity to MS/MS spectra

scientific article published in March 2003

Possible Role of Envelope Components in the Extreme Copper Resistance of the Biomining Acidithiobacillus ferrooxidans

scientific article published on 10 July 2018

Protein Information and Knowledge Extractor: Discovering biological information from proteomics data.

scientific article

Protein microsequencing

scientific article

Proteomic analysis of apical microvillous membranes of syncytiotrophoblast cells reveals a high degree of similarity with lipid rafts

scientific article

Proteomic analysis reveals heat shock protein 70 has a key role in polycythemia Vera.

scientific article

Quantitative and qualitative influences of tapasin on the class I peptide repertoire.

scientific article

Refinement of two-dimensional electrophoresis for vitreous proteome profiling using an artificial neural network

scientific article published on 31 May 2019

Response of the biomining Acidithiobacillus ferrooxidans to high cadmium concentrations

scientific article published on 13 December 2018

Response to copper of Acidithiobacillus ferrooxidans ATCC 23270 grown in elemental sulfur

scientific article published on 18 July 2014

Serum Exosome Isolation by Size-Exclusion Chromatography for the Discovery and Validation of Preeclampsia-Associated Biomarkers

scientific article published on 01 January 2019

Sweet Pepper (Capsicum annuum L.) Fruits Contain an Atypical Peroxisomal Catalase That is Modulated by Reactive Oxygen and Nitrogen Species

scientific article published on 04 September 2019

The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards

scientific article

The SysteMHC Atlas project

scientific article published on 29 July 2017

The innate immunity role of cathepsin-D is linked to Trp-491 and Trp-492 residues of listeriolysin O.

scientific article published in May 2009

The same natural ligand is involved in allorecognition of multiple HLA-B27 subtypes by a single T cell clone: role of peptide and the MHC molecule in alloreactivity.

scientific article

Translocase and major signal peptidase malfunctions affect aerial mycelium formation in Streptomyces lividans

scientific article published on 13 April 2012

Two HLA-B14 subtypes (B1402 and B1403) differentially associated with ankylosing spondylitis differ substantially in peptide specificity but have limited peptide and T-cell epitope sharing with HLA-B27.

scientific article published on 22 August 2005

Unveiling the rat urinary proteome with three complementary proteomics approaches

scientific article

iTRAQ Quantitative Proteomic Analysis of Vitreous from Patients with Retinal Detachment

scientific article published on 11 April 2018

List of works by Alberto Paradela

A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens

A Multi-Centric Study To Assess Reproducibility of Protein Quantification By SRM LC-MS Proteomic Analysis

A multicentric study to evaluate the use of relative retention times in targeted proteomics.

A systematic approach to assess amino acid conversions in SILAC experiments.

Advances in the analysis of protein phosphorylation.

B*2707 differs in peptide specificity from B*2705 and B*2704 as much as from HLA-B27 subtypes not associated to spondyloarthritis.

Blockade of the trans-sulfuration pathway in acute pancreatitis due to nitration of cystathionine β-synthase

Comparative Analysis of the Endogenous Peptidomes Displayed by HLA-B*27 and Mamu-B*08: Two MHC Class I Alleles Associated with Elite Control of HIV/SIV Infection

Cryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes

Datasets for transcriptomics, q-proteomics and phenotype microarrays of polyphosphate metabolism mutants from Escherichia coli.

Differential association of HLA-B*2705 and B*2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability

Differential cleavage of lysyl oxidase by the metalloproteinases BMP1 and ADAMTS2/14 regulates collagen binding through a tyrosine sulfate domain

Effect of Infliximab in oxidised serum albumin levels during experimental colitis

Evaluation of isotope-coded protein labeling (ICPL) in the quantitative analysis of complex proteomes

Expression of an optimized Argopecten purpuratus antimicrobial peptide in E. coli and evaluation of the purified recombinant protein by in vitro challenges against important plant fungi.

Generalized method for probability-based peptide and protein identification from tandem mass spectrometry data and sequence database searching

Geographical focus. Proteomics initiatives in Spain: ProteoRed

Global effect of the lack of inorganic polyphosphate in the extremophilic archaeon Sulfolobus solfataricus: A proteomic approach

Global response of Acidithiobacillus ferrooxidans ATCC 53993 to high concentrations of copper: A quantitative proteomics approach

Growth of Acidithiobacillus Ferrooxidans ATCC 23270 in Thiosulfate Under Oxygen-Limiting Conditions Generates Extracellular Sulfur Globules by Means of a Secreted Tetrathionate Hydrolase ⬇️

Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

HLA-B27: a registry of constitutive peptide ligands.

Helicobacter pylori exhibits a fur-dependent acid tolerance response

Immobilized metal affinity chromatography/reversed-phase enrichment of phosphopeptides and analysis by CID/ETD tandem mass spectrometry

In-Depth Proteomic Characterization of Classical and Non-Classical Monocyte Subsets.

Incomplete tyrosine 1680 sulphation in recombinant FVIII concentrates

Inverse regulation in the metabolic genes pckA and metE revealed by proteomic analysis of the Salmonella RcsCDB regulon

Juan Pablo Albar (1953-2014).

Liver cancer-associated changes to the proteome: what deserves clinical focus?

Modulation at multiple anchor positions of the peptide specificity of HLA-B27 subtypes differentially associated with ankylosing spondylitis

Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton

Multi-level evaluation of Escherichia coli polyphosphate related mutants using global transcriptomic, proteomic and phenomic analyses

Multicentric study of the effect of pre-analytical variables in the quality of plasma samples stored in biobanks using different complementary proteomic methods.

New copper resistance determinants in the extremophile acidithiobacillus ferrooxidans: a quantitative proteomic analysis

New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study

Peptide presentation to an alloreactive CTL clone is modulated through multiple mechanisms involving polymorphic and conserved residues in HLA-B27.

Peptide rearrangement during quadrupole ion trap fragmentation: added complexity to MS/MS spectra

Possible Role of Envelope Components in the Extreme Copper Resistance of the Biomining Acidithiobacillus ferrooxidans

Protein Information and Knowledge Extractor: Discovering biological information from proteomics data.

Protein microsequencing

Proteomic analysis of apical microvillous membranes of syncytiotrophoblast cells reveals a high degree of similarity with lipid rafts

Proteomic analysis reveals heat shock protein 70 has a key role in polycythemia Vera.

Quantitative and qualitative influences of tapasin on the class I peptide repertoire.

Refinement of two-dimensional electrophoresis for vitreous proteome profiling using an artificial neural network

Response of the biomining Acidithiobacillus ferrooxidans to high cadmium concentrations

Response to copper of Acidithiobacillus ferrooxidans ATCC 23270 grown in elemental sulfur

Serum Exosome Isolation by Size-Exclusion Chromatography for the Discovery and Validation of Preeclampsia-Associated Biomarkers

Sweet Pepper (Capsicum annuum L.) Fruits Contain an Atypical Peroxisomal Catalase That is Modulated by Reactive Oxygen and Nitrogen Species

The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards

The SysteMHC Atlas project

The innate immunity role of cathepsin-D is linked to Trp-491 and Trp-492 residues of listeriolysin O.

The same natural ligand is involved in allorecognition of multiple HLA-B27 subtypes by a single T cell clone: role of peptide and the MHC molecule in alloreactivity.

Translocase and major signal peptidase malfunctions affect aerial mycelium formation in Streptomyces lividans

Two HLA-B14 subtypes (B*1402 and B*1403) differentially associated with ankylosing spondylitis differ substantially in peptide specificity but have limited peptide and T-cell epitope sharing with HLA-B27.

Unveiling the rat urinary proteome with three complementary proteomics approaches

iTRAQ Quantitative Proteomic Analysis of Vitreous from Patients with Retinal Detachment

B2707 differs in peptide specificity from B2705 and B*2704 as much as from HLA-B27 subtypes not associated to spondyloarthritis.

Comparative Analysis of the Endogenous Peptidomes Displayed by HLA-B27 and Mamu-B08: Two MHC Class I Alleles Associated with Elite Control of HIV/SIV Infection

Differential association of HLA-B2705 and B2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability

Two HLA-B14 subtypes (B1402 and B1403) differentially associated with ankylosing spondylitis differ substantially in peptide specificity but have limited peptide and T-cell epitope sharing with HLA-B27.