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List of works by B. Jesse Shapiro

A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities

scientific article published on 10 March 2022

A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities

scientific article published on 07 August 2020

A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.

scientific article

An experimental test of the causes of small-scale phenotypic differentiation in a population of great tits

article

Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes

scientific article published on 01 March 2020

Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course.

scientific article

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

scientific article

Coherence of Microcystis species revealed through population genomics

scientific article published on 30 July 2019

Community rescue in experimental phytoplankton communities facing severe herbicide pollution

scientific article published on 02 March 2020

Comparing patterns of natural selection across species using selective signatures

scientific article

Cooking and co-ingested polyphenols reduce in vitro methylmercury bioaccessibility from fish and may alter exposure in humans.

scientific article

Diversity Assessment of Toxic Cyanobacterial Blooms during Oxidation

scientific article published on 20 November 2020

Does diversity beget diversity in microbiomes?

scientific article published on 20 November 2020

Environment and host species shape the skin microbiome of captive neotropical bats

scientific article published on 20 September 2016

Evolutionary consequences of intra-patient phage predation on microbial populations

scientific article

Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere <i>Methylobacterium</i> Diversity

scientific article published on 25 January 2022

Genome Evolution in Bacteria Isolated from Million-Year-Old Subseafloor Sediment

scientific article published on 17 August 2021

Gut Microbiome of the Canadian Arctic Inuit

scientific article published on 04 January 2017

How clonal are bacteria over time?

scientific article published on 5 April 2016

Microbial Speciation

scientific article published on 09 September 2015

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

scientific article

Ordering microbial diversity into ecologically and genetically cohesive units

scientific article

Origins of pandemic Vibrio cholerae from environmental gene pools.

scientific article

Phage predation, disease severity, and pathogen genetic diversity in cholera patients

scientific article published on 18 April 2024

Phenotypic differentiation of Streptococcus pyogenes populations is induced by recombination-driven gene-specific sweeps

scientific article published on 8 November 2016

Population genomics of Mycobacterium tuberculosis in the Inuit

scientific article

Population genomics of early events in the ecological differentiation of bacteria.

scientific article published on April 2012

Reproducibility of Vibrionaceae population structure in coastal bacterioplankton.

scientific article published on 22 November 2012

Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment

scientific article

Reuniting ecology and evolution

scientific article published on 17 December 2018

Signatures of natural selection and ecological differentiation in microbial genomes

scientific article

Sympatric speciation: when is it possible in bacteria?

scientific article

The Inuit gut microbiome is dynamic over time and shaped by traditional foods.

scientific article published on 16 November 2017

The advent of genome-wide association studies for bacteria.

scientific article published on 25 March 2015

The evolution of realized niches within freshwater Synechococcus

scientific article published on 11 February 2020

The population genetics of pangenomes

scientific article published in December 2017

The slow:fast substitution ratio reveals changing patterns of natural selection in gamma-proteobacterial genomes

scientific article

Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes

scientific article published on 26 March 2020

VSG switching in Trypanosoma brucei: antigenic variation analysed using RNAi in the absence of immune selection.

scientific article published on September 2005

What Is Speciation?

scientific article

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