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List of works by Daoud Sie

A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover

scientific article

Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life

scientific article

Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer

scientific article published in PLoS ONE

Condensin II mutation causes T-cell lymphoma through tissue-specific genome instability

scientific article

Copy number signatures and mutational processes in ovarian carcinoma

scientific article published on 13 August 2018

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

scientific article

Diagnosis of fanconi anemia: mutation analysis by next-generation sequencing

scientific article

EGFR mutation analysis in sputum of lung cancer patients: a multitechnique study

scientific article published on 5 August 2013

Fetal fraction evaluation in non-invasive prenatal screening (NIPS)

scientific article published on 25 September 2018

Functional Screening Identifies Human miRNAs that Modulate Adenovirus Propagation in Prostate Cancer Cells.

scientific article

Genome-wide microRNA analysis of HPV-positive self-samples yields novel triage markers for early detection of cervical cancer.

scientific article

Genomic profiling of stage II and III colon cancers reveals APC mutations to be associated with survival in stage III colon cancer patients

scientific article published on 06 October 2016

HELLP babies link a novel lincRNA to the trophoblast cell cycle

scientific article

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

scientific article published on 16 September 2015

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors.

scientific article published on 18 August 2011

Insertional mutagenesis in mice deficient for p15Ink4b, p16Ink4a, p21Cip1, and p27Kip1 reveals cancer gene interactions and correlations with tumor phenotypes

scientific article

Landscape of chromosomal copy number aberrations in gangliogliomas and dysembryoplastic neuroepithelial tumours

scientific article published on 12 March 2015

Large-scale mutagenesis in p19(ARF)- and p53-deficient mice identifies cancer genes and their collaborative networks

scientific article published on May 2008

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing

scientific article published on 5 October 2015

MicroRNA sequence and expression analysis in breast tumors by deep sequencing

scientific article

Molecular heterogeneity in human papillomavirus-dependent and -independent vulvar carcinogenesis.

scientific article

No evidence for active human papillomavirus (HPV) in fields surrounding HPV-positive oropharyngeal tumors

scientific article published on 11 October 2013

Non-classic EGFR mutations in a cohort of Dutch EGFR-mutated NSCLC patients and outcomes following EGFR-TKI treatment.

scientific article published on 22 November 2016

Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes

scientific article published on 18 September 2014

Novel cases of D-2-hydroxyglutaric aciduria with IDH1 or IDH2 mosaic mutations identified by amplicon deep sequencing

scientific article published on 18 September 2013

One naive T cell, multiple fates in CD8+ T cell differentiation.

scientific article

Performance of amplicon-based next generation DNA sequencing for diagnostic gene mutation profiling in oncopathology.

scientific article published on 11 September 2014

Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes.

scientific article published on 13 January 2015

Recruitment of antigen-specific CD8+ T cells in response to infection is markedly efficient

scientific article published in September 2009

Search for a gene expression signature of breast cancer local recurrence in young women

scientific article published on 23 January 2012

ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs

scientific article

Somatic mutation in PIK3CA is a late event in cervical carcinogenesis

scientific article published on 21 September 2015

Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

scientific article

Spatial and temporal evolution of distal 10q deletion, a prognostically unfavorable event in diffuse low-grade gliomas

scientific article

Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.

scientific article published on 17 August 2014

The T7-primer is a source of experimental bias and introduces variability between microarray platforms

scientific article

To DNA or not to DNA? That is the question, when it comes to molecular subtyping for the clinic!

scientific article published on 14 June 2011

Volatile anesthetics modulate gene expression in breast and brain tumor cells.

scientific article published on October 2010