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List of works by Francisco Peñagaricano

Across-country genomic prediction of bull fertility in Jersey dairy cattle

scientific article published on 24 September 2020

An application of MeSH enrichment analysis in livestock

scientific article published on 02 June 2015

Assessment of Poisson, probit and linear models for genetic analysis of presence and number of black spots in Corriedale sheep

scientific article published on 22 December 2010

Association between milk protein gene variants and protein composition traits in dairy cattle

scientific article published on 01 January 2012

Association of SNP of neuropeptide Y, leptin, and IGF-1 genes with residual feed intake in confinement and under grazing condition in Angus cattle

scientific article published on 23 July 2013

Association of lipid-related genes implicated in conceptus elongation with female fertility traits in dairy cattle

scientific article published on 30 August 2019

Association of milk protein genes with fertilization rate and early embryonic development in Holstein dairy cattle

scientific article published on 13 October 2011

Associations between maternal characteristics and health, survival, and performance of dairy heifers from birth through first lactation

scientific article published on 31 October 2019

Characterization and functional roles of paternal RNAs in 2-4 cell bovine embryos

scientific article published on 30 December 2019

Comparative genomics between fly, mouse, and cattle identifies genes associated with sire conception rate

scientific article published on 23 August 2012

Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq

scientific article published on 24 July 2018

Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes

scientific article published on 24 February 2020

Differential expression of heat shock protein genes and their splice variants in bovine preimplantation embryos.

scientific article published in August 2011

Differential network analysis of bovine muscle reveals changes in gene coexpression patterns in response to changes in maternal nutrition

scientific article published on 02 October 2020

Early genomic prediction of daughter pregnancy rate is associated with improved reproductive performance in Holstein dairy cows

scientific article published on 20 February 2020

Effect of maternal methionine supplementation on the transcriptome of bovine preimplantation embryos

scientific article

Estimates of genetic parameters for feeding behavior traits and their associations with feed efficiency in Holstein cows

scientific article published in 2022

Evaluating the performance of machine learning methods and variable selection methods for predicting difficult-to-measure traits in Holstein dairy cattle using milk infrared spectral data

scientific article published in 2021

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data

scientific article

Gene Mapping and Gene-Set Analysis for Milk Fever Incidence in Holstein Dairy Cattle

article

Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep.

scientific article

Gene mapping and genomic prediction of bull fertility using sex chromosome markers

scientific article published on 13 February 2020

Genetic dissection of bull fertility in US Jersey dairy cattle

scientific article published on 14 August 2018

Genetic dissection of reproductive performance of dairy cows under heat stress

scientific article published on 03 May 2020

Genetic parameter estimation for long endurance trials in the Uruguayan Criollo horse

scientific article published on 07 May 2018

Genetic parameters of objectionable fibers and of their associations with fleece traits in Corriedale sheep.

scientific article published in January 2016

Genome-wide association mapping and pathway analysis of leukosis incidence in a US Holstein cattle population

scientific article published on 19 April 2016

Genome-wide association study identifies candidate markers for bull fertility in Holstein dairy cattle

scientific article published in July 2012

Genomic architecture of bovine κ-casein and β-lactoglobulin.

scientific article published on 05 June 2013

Genomic merit for reproductive traits. I: Estrous characteristics and fertility in Holstein heifers

scientific article published on 25 April 2019

Genomic merit for reproductive traits. II: Physiological responses of Holstein heifers

scientific article published on 25 April 2019

Genomic prediction of bull fertility in US Jersey dairy cattle

scientific article published on 01 February 2019

Gestational and lactational exposure to gossypol alters the testis transcriptome

scientific article published on 17 January 2020

Impact of Fluoxetine Treatment and Folic Acid Supplementation on the Mammary Gland Transcriptome During Peak Lactation

scientific article published on 23 February 2022

In Utero Heat Stress Alters the Offspring Epigenome

scientific article published in Scientific Reports

Increasing serotonin concentrations alter calcium and energy metabolism in dairy cows

scientific article

Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study.

scientific article published on January 2012

Insights into the maize pan-genome and pan-transcriptome

scientific article published on 31 January 2014

Integration of whole-genome DNA methylation data with RNA sequencing data to identify markers for bull fertility

scientific article published on 23 April 2020

Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy

scientific article published on 6 February 2018

Invited review: Genetic contributions underlying the development of preimplantation bovine embryos.

scientific article published on 28 December 2013

Knockdown of CDKN1C (p57(kip2)) and PHLDA2 results in developmental changes in bovine pre-implantation embryos

scientific article published on 22 July 2013

Long-term effects of postpartum clinical disease on milk production, reproduction, and culling of dairy cows

scientific article published on 20 September 2019

Maternal Diet during Pregnancy Induces Gene Expression and DNA Methylation Changes in Fetal Tissues in Sheep

scientific article published on 5 April 2013

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep

scientific article

MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken

scientific article published on 03 June 2016

Mechanisms for rescue of CL during pregnancy: Gene expression in bovine CL following intrauterine pulses of Prostaglandins E1 and F2α.

scientific article published on 27 December 2017

Modelling female fertility traits in beef cattle using linear and non-linear models.

scientific article

Novel transcripts and alternatively spliced genes are associated with early development in bovine embryos

scientific article published in August 2012

Predicting bull fertility using genomic data and biological information

scientific article

Predicting male fertility in dairy cattle using markers with large effect and functional annotation data

scientific article published on 02 April 2019

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

scientific article

RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress

scientific article published on 23 July 2018

Searching for causal networks involving latent variables in complex traits: Application to growth, carcass, and meat quality traits in pigs.

scientific article published on October 2015

Short communication: A missense mutation in the PROP1 (prophet of Pit 1) gene affects male fertility and milk production traits in the US Holstein population

scientific article published on 14 December 2012

Short communication: Association of an OLR1 polymorphism with milk production traits in the Israeli Holstein population

scientific article published on 01 March 2012

Structural Equation Modeling and Whole-Genome Scans Uncover Chromosome Regions and Enriched Pathways for Carcass and Meat Quality in Beef

scientific article published on 13 November 2018

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models

scientific article published on 23 April 2015

Transcriptomic Analysis of the Mouse Mammary Gland Reveals New Insights for the Role of Serotonin in Lactation

scientific article published on 15 October 2015

Transcriptomic analysis of eyelid pigmentation in Hereford cattle

scientific article published on 15 October 2020

Unravelling the genomic architecture of bull fertility in Holstein cattle

scientific article

Whole Genome Mapping Reveals Novel Genes and Pathways Involved in Milk Production Under Heat Stress in US Holstein Cows

scientific article published on 04 October 2019

Whole-genome homozygosity mapping reveals candidate regions affecting bull fertility in US Holstein cattle

scientific article published on 04 May 2020

Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle.

scientific article published on 27 February 2018

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