List of works - Iosif I. Vaisman

A combined sequence-structure approach for predicting resistance to the non-nucleoside HIV-1 reverse transcriptase inhibitor Nevirapine

scientific article published on 23 November 2010

A new topological method to measure protein structure similarity.

scientific article

A simple topological representation of protein structure: implications for new, fast, and robust structural classification.

scientific article

A structure-based computational mutagenesis elucidates the spectrum of stability-activity relationships in proteins

scientific article

AUTO-MUTE 2.0: A Portable Framework with Enhanced Capabilities for Predicting Protein Functional Consequences upon Mutation

scientific article published on 17 August 2014

AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements.

scientific article

Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage ⬇️

scientific article published on October 5, 2010

Accurate prediction of enzyme mutant activity based on a multibody statistical potential.

scientific article

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.

scientific article

Cell surface expression of CD147/EMMPRIN is regulated by cyclophilin 60

scientific article

Comprehensive mutagenesis of HIV-1 protease: a computational geometry approach.

scientific article

Computational mutagenesis studies of protein structure-function correlations.

scientific article

Discrimination of thermophilic and mesophilic proteins

scientific article

Elevated TNFR1 and serotonin in bone metastasis are correlated with poor survival following bone metastasis diagnosis for both carcinoma and sarcoma primary tumors

scientific article

Graph theoretic properties of networks formed by the Delaunay tessellation of protein structures

scientific article published on 25 April 2006

Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms.

scientific article

Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein

scientific article published on 18 August 2009

New method for protein secondary structure assignment based on a simple topological descriptor.

scientific article

Novel Approach for Clustering Zeolite Crystal Structures.

scientific article published on 29 March 2010

Predicting the transactivation activity of p53 missense mutants using a four-body potential score derived from Delaunay tessellations

scientific article

SECOST: sequence-conformation-structure database for amino acid residues in proteins

scientific article published on 01 June 1999

Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins

scientific article published in January 2003

Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs

scientific article published in November 2005

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers

scientific article

Structure-based prediction of protein activity changes: Assessing the impact of single residue replacements ⬇️

scientific article published on January 1, 2011

Structure-based predictors of resistance to the HIV-1 integrase inhibitor Elvitegravir

scientific article published on 25 March 2014

List of works by Iosif I. Vaisman

A combined sequence-structure approach for predicting resistance to the non-nucleoside HIV-1 reverse transcriptase inhibitor Nevirapine

A new topological method to measure protein structure similarity.

A simple topological representation of protein structure: implications for new, fast, and robust structural classification.

A structure-based computational mutagenesis elucidates the spectrum of stability-activity relationships in proteins

AUTO-MUTE 2.0: A Portable Framework with Enhanced Capabilities for Predicting Protein Functional Consequences upon Mutation

AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements.

Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage ⬇️

Accurate prediction of enzyme mutant activity based on a multibody statistical potential.

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.

Cell surface expression of CD147/EMMPRIN is regulated by cyclophilin 60

Comprehensive mutagenesis of HIV-1 protease: a computational geometry approach.

Computational mutagenesis studies of protein structure-function correlations.

Discrimination of thermophilic and mesophilic proteins

Elevated TNFR1 and serotonin in bone metastasis are correlated with poor survival following bone metastasis diagnosis for both carcinoma and sarcoma primary tumors

Graph theoretic properties of networks formed by the Delaunay tessellation of protein structures

Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms.

Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein

New method for protein secondary structure assignment based on a simple topological descriptor.

Novel Approach for Clustering Zeolite Crystal Structures.

Predicting the transactivation activity of p53 missense mutants using a four-body potential score derived from Delaunay tessellations

SECOST: sequence-conformation-structure database for amino acid residues in proteins

Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins

Statistical geometry approach to the study of functional effects of human nonsynonymous SNPs

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers

Structure-based prediction of protein activity changes: Assessing the impact of single residue replacements ⬇️

Structure-based predictors of resistance to the HIV-1 integrase inhibitor Elvitegravir