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List of works by Matthew Wakefield

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii).

scientific article

Age-dependent transcriptome and proteome following transection of neonatal spinal cord of Monodelphis domestica (South American grey short-tailed opossum)

scientific article

AmpliVar: mutation detection in high-throughput sequence from amplicon-based libraries.

scientific article published on 16 March 2015

Assignment of BReast Cancer Associated 1 (BRCA1) to tammar wallaby (Macropus eugenii) chromosome 2q3 by in situ hybridization

scientific article published on 01 January 2006

CX-5461 activates the DNA damage response and demonstrates therapeutic efficacy in high-grade serous ovarian cancer

scientific article published on 26 May 2020

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity

scientific article

Characterization of a <i>RAD51C</i>-silenced high-grade serous ovarian cancer model during development of PARP inhibitor resistance

scientific article published on 09 July 2021

Comparative maps of vertebrates

scientific article published in October 1996

Cone visual pigments of monotremes: filling the phylogenetic gap.

scientific article published in May 2008

Cone visual pigments of the Australian marsupials, the stripe-faced and fat-tailed dunnarts: sequence and inferred spectral properties.

scientific article published on May 2004

Control of bacterial virulence by the RalR regulator of the rabbit-specific enteropathogenic Escherichia coli strain E22.

scientific article published on 03 September 2013

Correction: Mechanisms That Determine the Internal Environment of the Developing Brain: A Transcriptomic, Functional and Ultrastructural Approach

scientific article published on 19 January 2016

DMRT gene cluster analysis in the platypus: New insights into genomic organization and regulatory regions

article

DNA repair processes are critical mediators of p53-dependent tumor suppression

scientific article published on 11 June 2018

Diverse mechanisms of PARP inhibitor resistance in ovarian cancer

scientific article published on 02 August 2019

Evolutionary adaptation of an AraC-like regulatory protein in Citrobacter rodentium and Escherichia species

scientific article

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

scientific article (publication date: July 2007)

FokI-dCas9 mediates high-fidelity genome editing in pigs

scientific article published on 12 August 2019

Gene ontology analysis for RNA-seq: accounting for selection bias

scientific article

Genome analysis of the platypus reveals unique signatures of evolution

scientific article

Genome analysis of the platypus reveals unique signatures of evolution

scientific article published in Nature

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

scientific article

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

article

Genome-wide analysis of the Pho regulon in a pstCA mutant of Citrobacter rodentium

scientific article

Genomics--from Neanderthals to high-throughput sequencing

scientific article published on January 2006

Histone underacetylation is an ancient component of mammalian X chromosome inactivation ⬇️

scientific article published on September 2, 1997

Influx mechanisms in the embryonic and adult rat choroid plexus: a transcriptome study

scientific article published on 28 April 2015

Involvement of PatE, a prophage-encoded AraC-like regulator, in the transcriptional activation of acid resistance pathways of enterohemorrhagic Escherichia coli strain EDL933.

scientific article

Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii)

scientific article published on 01 January 2009

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals

scientific article

Marsupials and monotremes sort genome treasures from junk

scientific article

MaveDB v2: a curated community database with over three million variant effects from multiplexed functional assays

Mechanisms that determine the internal environment of the developing brain: a transcriptomic, functional and ultrastructural approach.

scientific article published on 02 July 2013

Methylation of all BRCA1 copies predicts response to the PARP inhibitor rucaparib in ovarian carcinoma

scientific article published in Nature Communications

Molecular correlates of platinum response in human high-grade serous ovarian cancer patient-derived xenografts

scientific article

Oocytes can efficiently repair DNA double-strand breaks to restore genetic integrity and protect offspring health

scientific article published on 07 May 2020

Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals.

scientific article published on 8 November 2008

Preclinical small molecule WEHI-7326 overcomes drug resistance and elicits response in patient-derived xenograft models of human treatment-refractory tumors

scientific article published on 12 March 2021

Primary mucinous ovarian neoplasms rarely exhibit a germ cell histogenesis

scientific article published on 05 November 2020

PyCogent: a toolkit for making sense from sequence

scientific article published in January 2007

PyEvolve: a toolkit for statistical modelling of molecular evolution

scientific article

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development

scientific article published on 08 March 2019

Rates of genome evolution and branching order from whole genome analysis

scientific article published on 09 May 2007

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex

scientific article published in March 2006

RegA, an AraC-like protein, is a global transcriptional regulator that controls virulence gene expression in Citrobacter rodentium

scientific article

RegR virulence regulon of rabbit-specific enteropathogenic Escherichia coli strain E22

scientific article published on 22 January 2013

Secondary Somatic Mutations Restoring RAD51C and RAD51D Associated with Acquired Resistance to the PARP Inhibitor Rucaparib in High-Grade Ovarian Carcinoma

scientific article published on 6 June 2017

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

scientific article published on 02 July 2013

SurvivalVolume: interactive volume threshold survival graphs

scientific article published on 14 December 2016

Targeting DNA repair: the genome as a potential biomarker.

scientific article published on 27 December 2017

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): sequence, spectral tuning, and evolution

scientific article published on 28 July 2003

The molecular origin and taxonomy of mucinous ovarian carcinoma

scientific article published on 02 September 2019

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals

scientific article

Therapeutic options for mucinous ovarian carcinoma

scientific article published on 02 January 2020

Towards an understanding of the genetic basis behind 1080 (sodium fluoroacetate) tolerance and an investigation of the candidate gene ACO2

article

Transcript length bias in RNA-seq data confounds systems biology

scientific article published in 2009

Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)

scientific article published on 02 August 2019

Vestige: maximum likelihood phylogenetic footprinting

scientific article

Xenomapper: Mapping reads in a mixed species context

scientific article published on 23 May 2016

Y chromosome microsatellite markers identified from the tammar wallaby (Macropus eugenii) and their amplification in three other macropod species

article

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