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List of works by José Afonso Guerra-assunção

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains.

scientific article

Cathepsin-L can resist lysis by human serum in Trypanosoma brucei brucei

scientific article (publication date: May 2014)

Chemotherapy induces canalization of cell state in childhood B-cell precursor acute lymphoblastic leukemia

scientific article published on 05 July 2021

EZH2 deficient T-cell acute lymphoblastic leukemia is sensitized to CHK1 inhibition through enhanced replication stress

scientific article published on 29 April 2020

Erratum: Corrigendum: Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma

scholarly article published in Nature Genetics

Erratum: Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome

scientific article published in Nature

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

scientific article

Extent, causes, and consequences of small RNA expression variation in human adipose tissue

scientific article

Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development

scientific article

Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations

scientific article

HIV-1 Vpr drives a tissue residency-like phenotype during selective infection of resting memory T cells

scientific article published on 12 April 2022

Identification of Recurrent Mutations in the microRNA-Binding Sites of B-Cell Lymphoma-Associated Genes in Follicular Lymphoma

scientific article published on 20 November 2020

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

scientific article published on 11 February 2014

Large-scale analysis of microRNA evolution ⬇️

scientific article published on June 6, 2012

Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area

scientific article

MapMi: automated mapping of microRNA loci

scientific article

Meta-analysis of tumor- and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition

scientific article published on 27 January 2021

Mouse genomic variation and its effect on phenotypes and gene regulation

scientific article (publication date: 14 September 2011)

PolyTB: a genomic variation map for Mycobacterium tuberculosis

scientific article

Publisher Correction: Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer

scientific article published on 03 June 2020

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

scientific article published on 27 May 2015

Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up

scientific article

Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer

scientific article published on 07 October 2019

The BioMart community portal: an innovative alternative to large, centralized data repositories

scientific article (publication date: July 2015)

Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations

scientific article

Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit

scientific article published on 02 July 2021

Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi

scientific article published on 16 July 2015

miRNA profiling of human naive CD4 T cells links miR-34c-5p to cell activation and HIV replication.

scientific article published on 19 December 2016

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