List of works - Matthew Anthony Care

A System for In Vitro Generation of Mature Murine Plasma Cells Uncovers Differential <i>Blimp-1</i>/<i>Prdm1</i> Promoter Usage

scientific article published on 15 December 2021

A dichotomy of gene regulatory associations during the activated B-cell to plasmablast transition

scientific article published on 25 August 2020

A microarray platform-independent classification tool for cell of origin class allows comparative analysis of gene expression in diffuse large B-cell lymphoma

scientific article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

scientific article published on 23 July 2008

An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

scientific article published on 26 April 2010

An ultra-deep sequencing strategy to detect sub-clonal TP53 mutations in presentation chronic lymphocytic leukaemia cases using multiple polymerases ⬇️

scientific article

Combining the interactome and deleterious SNP predictions to improve disease gene identification.

scientific article published in March 2009

Deleterious SNP prediction

doctoral thesis

Deleterious SNP prediction: be mindful of your training data!

scientific article

Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding.

scientific article

GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

scientific article

Gene expression meta-analysis reveals immune response convergence on the IFNγ-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma ⬇️

scientific article

Gene-expression profiling of bortezomib added to standard chemoimmunotherapy for diffuse large B-cell lymphoma (REMoDL-B): an open-label, randomised, phase 3 trial

article

Growth Factor-like Gene Regulation Is Separable from Survival and Maturation in Antibody-Secreting Cells ⬇️

article

In vitro generation of long-lived human plasma cells.

scientific article published on 16 November 2012

Network Analysis Identifies Proinflammatory Plasma Cell Polarization for Secretion of ISG15 in Human Autoimmunity. ⬇️

scientific article published on 29 June 2016

Parsimonious Gene Correlation Network Analysis (PGCNA): a tool to define modular gene co-expression for refined molecular stratification in cancer

article

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks ⬇️

scientific article

SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity ⬇️

scientific article

Sphingosine-1-phosphate signalling drives an angiogenic transcriptional programme in diffuse large B cell lymphoma

scientific article published on 16 May 2019

Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas ⬇️

scientific article published in July 2015

Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome.

scientific article published on 13 September 2012

List of works by Matthew Anthony Care

A System for In Vitro Generation of Mature Murine Plasma Cells Uncovers Differential <i>Blimp-1</i>/<i>Prdm1</i> Promoter Usage

A dichotomy of gene regulatory associations during the activated B-cell to plasmablast transition

A microarray platform-independent classification tool for cell of origin class allows comparative analysis of gene expression in diffuse large B-cell lymphoma

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

An ultra-deep sequencing strategy to detect sub-clonal TP53 mutations in presentation chronic lymphocytic leukaemia cases using multiple polymerases ⬇️

Combining the interactome and deleterious SNP predictions to improve disease gene identification.

Deleterious SNP prediction

Deleterious SNP prediction: be mindful of your training data!

Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding.

GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

Gene expression meta-analysis reveals immune response convergence on the IFNγ-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma ⬇️

Gene-expression profiling of bortezomib added to standard chemoimmunotherapy for diffuse large B-cell lymphoma (REMoDL-B): an open-label, randomised, phase 3 trial

Growth Factor-like Gene Regulation Is Separable from Survival and Maturation in Antibody-Secreting Cells ⬇️

In vitro generation of long-lived human plasma cells.

Network Analysis Identifies Proinflammatory Plasma Cell Polarization for Secretion of ISG15 in Human Autoimmunity. ⬇️

Parsimonious Gene Correlation Network Analysis (PGCNA): a tool to define modular gene co-expression for refined molecular stratification in cancer

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks ⬇️

SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity ⬇️

Sphingosine-1-phosphate signalling drives an angiogenic transcriptional programme in diffuse large B cell lymphoma

Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas ⬇️

Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome.