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List of works by Jason Gertz

A cis-regulatory logic simulator

scientific article

Allele-specific distribution of RNA polymerase II on female X chromosomes ⬇️

scientific article published on July 26, 2011

Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.

scientific article

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

scientific article

Architecture of the human regulatory network derived from ENCODE data

scientific article (publication date: 6 September 2012)

CRISPR Epigenome Editing of AKAP150 in DRG Neurons Abolishes Degenerative IVD-Induced Neuronal Activation.

scientific article

CTCF/cohesin-mediated DNA looping is required for protocadherin α promoter choice

scientific article

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

scientific article

Clinical and Genomic Crosstalk between Glucocorticoid Receptor and Estrogen Receptor α In Endometrial Cancer.

scientific article

Cooperative Dynamics of AR and ER Activity in Breast Cancer

scientific article published on 26 August 2016

Discordant Haplotype Sequencing Identifies Functional Variants at the 2q33 Breast Cancer Risk Locus

scientific article published on 21 January 2016

Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics.

scientific article published on August 2005

Dissection of Enhancer Function Using Multiplex CRISPR-based Enhancer Interference in Cell Lines

scientific article published on 02 June 2018

Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation

scientific article published on 11 July 2016

Distinct properties of cell-type-specific and shared transcription factor binding sites

scientific article published on 26 September 2013

Early de novo DNA methylation and prolonged demethylation in the muscle lineage.

scientific article published on 15 February 2013

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

scientific article published on 2 February 2012

Environment-specific combinatorial cis-regulation in synthetic promoters

scientific article

Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions.

scientific article

Estrogen Signaling in Endometrial Cancer: a Key Oncogenic Pathway with Several Open Questions

scientific article published on 02 February 2019

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

scientific article published on 3 December 2013

GIGGLE: a search engine for large-scale integrated genome analysis.

scientific article published on 8 January 2018

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

scientific article published on 23 September 2021

Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner.

scientific article

Genomic regulation of invasion by STAT3 in triple negative breast cancer.

scientific article published on 24 December 2016

Inferring protein interactions from phylogenetic distance matrices

scientific article published on 01 November 2003

IκB kinase epsilon (IKK(epsilon)) regulates the balance between type I and type II interferon responses

scientific article published on 14 December 2011

MYC Drives Progression of Small Cell Lung Cancer to a Variant Neuroendocrine Subtype with Vulnerability to Aurora Kinase Inhibition.

scientific article published on 31 December 2016

Mapping genome-wide transcription factor binding sites in frozen tissues

scientific article published on 16 September 2013

Multigene testing of moderate-risk genes: be mindful of the missense

scientific article

Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor α-Bound Enhancers

scientific article

Phylogeny based discovery of regulatory elements

scientific article

Post-mortem molecular profiling of three psychiatric disorders

scientific article

Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites

scientific article

RNA sequencing of pancreatic adenocarcinoma tumors yields novel expression patterns associated with long-term survival and reveals a role for ANGPTL4

scientific article published on 26 May 2016

Recurrent read-through fusion transcripts in breast cancer

scientific article

Research Resource: Enhanced Genome-Wide Occupancy of Estrogen Receptor α by the Cochaperone p23 in Breast Cancer Cells ⬇️

scientific article published on November 10, 2011

Sufficiency analysis of estrogen responsive enhancers using synthetic activators

scientific article published on 30 September 2019

The Hypersensitive Glucocorticoid Response Specifically Regulates Period 1 and Expression of Circadian Genes ⬇️

scientific article published on July 16, 2012

Transposase mediated construction of RNA-seq libraries.

scientific article

Widespread plasticity in CTCF occupancy linked to DNA methylation

scientific article

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