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A cis-regulatory-directed pipeline for the identification of genes involved in cardiac development and disease

scientific article published on 15 December 2021

A gene regulatory network anchored by LIM homeobox 1 for embryonic head development

scientific article published on 14 September 2018

A novel conditional mouse model for Nkx2-5 reveals transcriptional regulation of cardiac ion channels.

scientific article published on 17 February 2016

A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes

scientific article published in July 2004

Activation of Nkx2.5 transcriptional program is required for adult myocardial repair

scientific article published on 27 May 2022

Analysis of steric effects in DamID profiling of transcription factor target genes

scientific article published on 8 February 2017

Asymmetric inheritance of the apical domain and self-renewal of retinal ganglion cell progenitors depend on Anillin function

scientific article published on 5 February 2015

Cardiac gene expression data and in silico analysis provide novel insights into human and mouse taste receptor gene regulation.

scientific article

Cell Type of Origin Dictates the Route to Pluripotency.

scientific article published in December 2017

Cis-regulatory properties of medaka synexpression groups

scientific article published on March 2012

Close association of olfactory placode precursors and cranial neural crest cells does not predestine cell mixing

scientific article

Combinatorial Ranking of Gene Sets to Predict Disease Relapse: The Retinoic Acid Pathway in Early Prostate Cancer.

scientific article published on 15 March 2017

Control of cardiac jelly dynamics by NOTCH1 and NRG1 defines the building plan for trabeculation

scientific article published in Nature

Defining the earliest step of cardiovascular progenitor specification during embryonic stem cell differentiation ⬇️

scientific article

Detection and identification of cis-regulatory elements using change-point and classification algorithms

scientific article published on 25 January 2022

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

scientific article published on January 2006

Drosophila Hrp48 Is Required for Mushroom Body Axon Growth, Branching and Guidance.

scientific article published on 27 August 2015

Evolutionary relationships and diversification of barhl genes within retinal cell lineages.

scientific article

Expression profiling in mouse fetal thymus reveals clusters of coordinately expressed genes that mark individual stages of T-cell ontogeny

scientific article published on 10 August 2002

Formation of the Embryonic Head in the Mouse: Attributes of a Gene Regulatory Network.

scientific article published on 15 February 2016

From whole-mount to single-cell spatial assessment of gene expression in 3D

scientific article published on 23 October 2020

GSD: a genetic screen database.

scientific article published on July 2004

Genetic networks governing heart development.

scientific article

Germline Stem Cell Activity Is Sustained by SALL4-Dependent Silencing of Distinct Tumor Suppressor Genes.

scientific article

Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1.

scientific article published on 13 August 2014

Identification of starmaker-like in medaka as a putative target gene of Pax2 in the otic vesicle.

scientific article published in November 2009

Imp promotes axonal remodeling by regulating profilin mRNA during brain development

scientific article published on 20 March 2014

Large-scale expression screening by automated whole-mount in situ hybridization

scientific article published in July 2004

MEPD: a Medaka gene expression pattern database

scientific article published on January 2003

MEPD: a resource for medaka gene expression patterns

scientific article published on 06 May 2005

Metformin intervention prevents cardiac dysfunction in a murine model of adult congenital heart disease

scientific article published on 15 November 2018

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

scientific article

Multi-Cellular Transcriptional Analysis of Mammalian Heart Regeneration ⬇️

scientific article

NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets

scientific article

New genes in the evolution of the neural crest differentiation program

scientific article (publication date: 2007)

Nlcam modulates midline convergence during anterior neural plate morphogenesis

scientific article published on 11 December 2009

Nuclear transporter Importin-13 plays a key role in the oxidative stress transcriptional response

scientific article published on 08 October 2021

Point mutations in murine Nkx2-5 phenocopy human congenital heart disease and induce pathogenic Wnt signaling.

scientific article

Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

scientific article published on October 2008

The Intercellular Tight Junction and Spontaneous Coronary Artery Dissection

scientific article published on 01 October 2018

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation

scientific article published on 24 June 2007

TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.

scientific article published on 5 April 2018

Tyrosine phosphorylation of LRP6 by Src and Fer inhibits Wnt/β-catenin signalling

scientific article

Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation

scientific article

Variable outcomes of human heart attack recapitulated in genetically diverse mice

scientific article published on 04 March 2019

β-catenin drives distinct transcriptional networks in proliferative and non-proliferative cardiomyocytes

scientific article published on 03 November 2020

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