List of works - John Archer

A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied

scientific article published on 18 November 2021

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

scientific article

Back to basics--how the evolution of the extracellular matrix underpinned vertebrate evolution.

scientific article published on April 2009

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

scientific article published on 23 November 2021

CTree: comparison of clusters between phylogenetic trees made easy

scientific article published on 23 August 2007

CView: A network based tool for enhanced alignment visualization

scientific article published on 13 June 2022

Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.

scientific article published on June 2009

Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection

scientific article

Identifying the important HIV-1 recombination breakpoints.

scientific article

Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus

scientific article published on 8 May 2009

Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.

scientific article published on 13 March 2013

Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.

scientific article

Sequence determinants of breakpoint location during HIV-1 intersubtype recombination.

scientific article published on 26 September 2006

Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons

scientific article published on 01 May 2018

The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach

scientific article

Transcriptome annotation and characterization of novel toxins in six scorpion species

scientific article published on 13 August 2019

Understanding the diversification of HIV-1 groups M and O.

scientific article

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism

scientific article

Using knowledge of protein structural constraints to predict the evolution of HIV-1.

scientific article

VTBuilder: a tool for the assembly of multi isoform transcriptomes.

scientific article

List of works by John Archer

A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

Back to basics--how the evolution of the extracellular matrix underpinned vertebrate evolution.

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

CTree: comparison of clusters between phylogenetic trees made easy

CView: A network based tool for enhanced alignment visualization

Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing.

Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection

Identifying the important HIV-1 recombination breakpoints.

Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus

Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism.

Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.

Sequence determinants of breakpoint location during HIV-1 intersubtype recombination.

Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons

The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach

Transcriptome annotation and characterization of novel toxins in six scorpion species

Understanding the diversification of HIV-1 groups M and O.

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism

Using knowledge of protein structural constraints to predict the evolution of HIV-1.

VTBuilder: a tool for the assembly of multi isoform transcriptomes.