List of works - Sergio Bordel

A community-driven global reconstruction of human metabolism. ⬇️

scientific article

A metabolic network of a phosphate-accumulating organism provides new insights into enhanced biological phosphorous removal ⬇️

scientific article published on 01 January 2011

A multi-step kinetic model for substrate assimilation and bacterial growth: application to benzene biodegradation

scientific article published in August 2007

A systematic selection of the non-aqueous phase in a bacterial two liquid phase bioreactor treating alpha-pinene

scientific article published on 6 March 2008

Bio-conversion of methane into high profit margin compounds: an innovative, environmentally friendly and cost-effective platform for methane abatement

scientific article published on 07 January 2019

Codon usage variability determines the correlation between proteome and transcriptome fold changes ⬇️

scientific article published on February 25, 2011

Constraint based modeling of metabolism allows finding metabolic cancer hallmarks and identifying personalized therapeutic windows.

scientific article published on 13 April 2018

Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors

scientific article

Dynamic13C-labeling experiments prove important differences in protein turnover rate between twoSaccharomyces cerevisiaestrains

scientific article published on 20 July 2012

Experimental evidence suggests the existence of evolutionary conserved global operation principles governing microbial metabolism

scientific article published on 22 October 2013

Gcn4p and the Crabtree effect of yeast: drawing the causal model of the Crabtree effect in Saccharomyces cerevisiae and explaining evolutionary trade-offs of adaptation to galactose through systems biology

article

Genome Scale Metabolic Model of the versatile methanotroph Methylocella silvestris

scientific article published on 16 July 2020

Genome scale metabolic models as tools for drug design and personalized medicine

scientific article published on 5 January 2018

Genome sequence of Methylocystis hirsuta CSC1, a polyhydroxyalkanoate producing methanotroph

scientific article published on 12 December 2018

Genome-scale metabolic models of yeast, methods for their reconstruction, and other applications

scientific article

Genome-scale modeling of the protein secretory machinery in yeast

scientific article

Halotolerance mechanisms of the methanotroph Methylomicrobium alcaliphilum

scientific article published on 16 July 2020

Identification of flux control in metabolic networks using non-equilibrium thermodynamics

scientific article published on 17 March 2010

Inhibitory effects of catechol accumulation on benzene biodegradation in Pseudomonas putida F1 cultures

scientific article published on 21 February 2007

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

scientific article

Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling

scientific article

Mathematical models of cell factories: moving towards the core of industrial biotechnology

scientific article published on 08 December 2010

Mechanistic model for the reclamation of industrial wastewaters using algal-bacterial photobioreactors

scientific article published in May 2009

Metabolic and protein interaction sub-networks controlling the proliferation rate of cancer cells and their impact on patient survival.

scientific article published on 24 October 2013

Modeling photosynthetically oxygenated biodegradation processes using artificial neural networks.

scientific article published on 17 November 2007

New insights on toluene biodegradation by Pseudomonas putida F1: influence of pollutant concentration and excreted metabolites

scientific article published on 30 November 2006

Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles

scientific article published on 7 April 2015

Predicting the accumulation of harmful metabolic byproducts during the treatment of VOC emissions in suspended growth bioreactors

scientific article published in August 2007

Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

scientific article

Response of Pseudomonas putida F1 cultures to fluctuating toluene loads and operational failures in suspended growth bioreactors.

scientific article published on 12 April 2008

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

scientific article

Screening Enzymes That Can Depolymerize Commercial Biodegradable Polymers: Heterologous Expression of Fusarium solani Cutinase in Escherichia coli

scientific article published in 2023

Symmetries and nonequilibrium thermodynamics.

scientific article

Systems biology or just biology? A report of the 11th International Conference on Systems Biology

scientific article published in December 2010

Toluene biodegradation by Pseudomonas putida F1: targeting culture stability in long-term operation

scientific article published on 9 May 2007

Transcriptional hallmarks of cancer cell lines reveal an emerging role of branched chain amino acid catabolism.

scientific article published on 10 August 2017

Understanding the interactions between bacteria in the human gut through metabolic modeling

scientific article

Use of genome-scale metabolic models for understanding microbial physiology

scientific article published on 24 April 2010

List of works by Sergio Bordel

A community-driven global reconstruction of human metabolism. ⬇️

A metabolic network of a phosphate-accumulating organism provides new insights into enhanced biological phosphorous removal ⬇️

A multi-step kinetic model for substrate assimilation and bacterial growth: application to benzene biodegradation

A systematic selection of the non-aqueous phase in a bacterial two liquid phase bioreactor treating alpha-pinene

Bio-conversion of methane into high profit margin compounds: an innovative, environmentally friendly and cost-effective platform for methane abatement

Codon usage variability determines the correlation between proteome and transcriptome fold changes ⬇️

Constraint based modeling of metabolism allows finding metabolic cancer hallmarks and identifying personalized therapeutic windows.

Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors

Dynamic13C-labeling experiments prove important differences in protein turnover rate between twoSaccharomyces cerevisiaestrains

Experimental evidence suggests the existence of evolutionary conserved global operation principles governing microbial metabolism

Gcn4p and the Crabtree effect of yeast: drawing the causal model of the Crabtree effect in Saccharomyces cerevisiae and explaining evolutionary trade-offs of adaptation to galactose through systems biology

Genome Scale Metabolic Model of the versatile methanotroph Methylocella silvestris

Genome scale metabolic models as tools for drug design and personalized medicine

Genome sequence of Methylocystis hirsuta CSC1, a polyhydroxyalkanoate producing methanotroph

Genome-scale metabolic models of yeast, methods for their reconstruction, and other applications

Genome-scale modeling of the protein secretory machinery in yeast

Halotolerance mechanisms of the methanotroph Methylomicrobium alcaliphilum

Identification of flux control in metabolic networks using non-equilibrium thermodynamics

Inhibitory effects of catechol accumulation on benzene biodegradation in Pseudomonas putida F1 cultures

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling

Mathematical models of cell factories: moving towards the core of industrial biotechnology

Mechanistic model for the reclamation of industrial wastewaters using algal-bacterial photobioreactors

Metabolic and protein interaction sub-networks controlling the proliferation rate of cancer cells and their impact on patient survival.

Modeling photosynthetically oxygenated biodegradation processes using artificial neural networks.

New insights on toluene biodegradation by Pseudomonas putida F1: influence of pollutant concentration and excreted metabolites

Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles

Predicting the accumulation of harmful metabolic byproducts during the treatment of VOC emissions in suspended growth bioreactors

Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

Response of Pseudomonas putida F1 cultures to fluctuating toluene loads and operational failures in suspended growth bioreactors.

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

Screening Enzymes That Can Depolymerize Commercial Biodegradable Polymers: Heterologous Expression of Fusarium solani Cutinase in Escherichia coli

Symmetries and nonequilibrium thermodynamics.

Systems biology or just biology? A report of the 11th International Conference on Systems Biology

Toluene biodegradation by Pseudomonas putida F1: targeting culture stability in long-term operation

Transcriptional hallmarks of cancer cell lines reveal an emerging role of branched chain amino acid catabolism.

Understanding the interactions between bacteria in the human gut through metabolic modeling

Use of genome-scale metabolic models for understanding microbial physiology