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List of works by Uwe Scholz

454 Transcriptome sequencing suggests a role for two-component signalling in cellularization and differentiation of barley endosperm transfer cells

scientific article

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics

scientific article published on 12 January 2007

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence

scientific article published on 14 April 2016

A case study for efficient management of high throughput primary lab data

scientific article

A chromosome conformation capture ordered sequence of the barley genome

scientific article

A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects.

scientific article

A physical, genetic and functional sequence assembly of the barley genome ⬇️

scientific article published on October 17, 2012

A query suggestion workflow for life science IR-systems

scientific article published on 13 June 2014

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

scientific article published on 15 November 2013

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

scientific article

ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions.

scientific article

Aadh2p: an Arxula adeninivorans alcohol dehydrogenase involved in the first step of the 1-butanol degradation pathway.

scientific article published on 12 October 2016

An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis

scientific article published on 9 April 2015

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

scientific article

Asexual genome evolution in the apomictic Ranunculus auricomus complex: examining the effects of hybridization and mutation accumulation

scientific article

BARLEX – the Barley Draft Genome Explorer

scholarly article by Christian Colmsee published in June 2015

Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools

scientific article

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

scientific article

BioDataServer: a SQL-based service for the online integration of life science data.

scientific article

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives.

scientific article

BrAPI-an application programming interface for plant breeding applications

scientific article published on 01 October 2019

CR-EST: a resource for crop ESTs

scientific article

Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries

scientific article published on 05 November 2020

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Comprehensive transcriptome analysis unravels the existence of crucial genes regulating primary metabolism during adventitious root formation in Petunia hybrida.

scientific article

Computational aspects underlying genome to phenome analysis in plants

article

Conserved synteny-based anchoring of the barley genome physical map.

scientific article

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping

scientific article published on 01 March 2018

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

scientific article published on 01 October 2015

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

scientific article

Detecting Large Chromosomal Modifications Using Short Read Data From Genotyping-by-Sequencing

scientific article published on 24 September 2019

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

scientific article published on 12 June 2013

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices

scientific article published in 2022

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

scientific article published on 14 March 2020

Fine mapping and comparative genomics integration of two quantitative trait loci controlling resistance to powdery mildew in a Spanish barley landrace

article

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

scientific article published on 27 May 2011

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

scientific article

From data to knowledge – big data needs stewardship, a plant phenomics perspective

scientific article published on 5 June 2022

From plant genomes to phenotypes

article

Gene content and virtual gene order of barley chromosome 1H.

scientific article published on 19 August 2009

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding

scientific article published on 28 June 2019

Genebank genomics highlights the diversity of a global barley collection

scientific article published on 12 November 2018

Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array.

scientific article published on 27 May 2008

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

scientific article published on 2 March 2013

High-resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV

How Next-Generation Sequencing Has Aided Our Understanding of the Sequence Composition and Origin of B Chromosomes.

scientific article published on 25 October 2017

IDPredictor: predict database links in biomedical database

scientific article published on 26 June 2012

Information processing for the analysis of metabolic pathways and inborn errors

scientific article published in June 1998

Information system for the support of research, diagnosis and therapy of inborn metabolic diseases

scientific article published in January 2001

Kmasker plants - a tool for assessing complex sequence space in plant species

scientific article published on 10 December 2019

Knowledge acquisition, management and representation for the diagnostic support in human inborn errors of metabolism

scientific article published in January 2000

LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions

scientific article published on 12 March 2018

LAILAPS: the plant science search engine

scientific article

Large-scale analysis of the barley transcriptome based on expressed sequence tags

scientific article published in October 2004

Long-read sequence assembly: a technical evaluation in barley

scientific article published on 01 July 2021

MISA-web: a web server for microsatellite prediction.

scientific article

Macroarray expression analysis of barley susceptibility and nonhost resistance to Blumeria graminis

scientific article published on 13 September 2005

Maize source leaf adaptation to nitrogen deficiency affects not only nitrogen and carbon metabolism but also control of phosphate homeostasis

scientific article published on 12 September 2012

Mapping-by-sequencing accelerates forward genetics in barley

scientific article

Meta-All: a system for managing metabolic pathway information

scientific article

MetaCrop 2.0: managing and exploring information about crop plant metabolism.

scientific article

MetaCrop: a detailed database of crop plant metabolism.

scientific article published on 11 October 2007

Metabolic drug pointing and information processing.

scientific article published in January 1999

Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species

scientific article published on 14 July 2015

Multiple wheat genomes reveal global variation in modern breeding

scientific article published on 25 November 2020

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

scientific article

Negative dominance and dominance-by-dominance epistatic effects reduce grain-yield heterosis in wide crosses in wheat

scientific article published on 12 June 2020

Novel developments of the MetaCrop information system for facilitating systems biological approaches

scientific article published on 25 March 2010

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize

scientific article (publication date: 29 December 2012)

PGP repository: a plant phenomics and genomics data publication infrastructure

scientific article

PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses.

scientific article published on 30 January 2014

Patterns of nucleotide asymmetries in plant and animal genomes

article

Phosphate systemically inhibits development of arbuscular mycorrhiza in Petunia hybrida and represses genes involved in mycorrhizal functioning.

scientific article

Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro

scientific article published on 20 January 2016

Phytohormones in plant root-Piriformospora indica mutualism.

scientific article published on 18 July 2009

Plant genome sequencing - applications for crop improvement

scientific article published on 21 September 2013

Programmatic Access to FAIRified Digital Plant Genetic Resources

scientific article published on 08 January 2020

Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping

scientific article (publication date: 2016)

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

scientific article published on 30 December 2021

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

scientific article published in 2022

Reticulate evolution of the rye genome

scientific article published on 8 October 2013

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

scientific article

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype

scientific article

Sequencing of BAC pools by different next generation sequencing platforms and strategies

scientific article

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus.

scientific article published on 8 December 2015

Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development

scientific article published on 02 June 2020

Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis.

scientific article published on January 2002

Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation.

scientific article published on 20 December 2011

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

scientific article published on 18 December 2019

Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition

scientific article published on 7 July 2015

The LAILAPS search engine: a feature model for relevance ranking in life science databases

scientific article published on 25 March 2010

The LAILAPS search engine: relevance ranking in life science databases

scientific article published on 15 January 2010

The barley pan-genome reveals the hidden legacy of mutation breeding

scientific article published on 25 November 2020

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest

scientific article

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

scientific article published on 07 November 2019

The distribution of α-kleisin during meiosis in the holocentromeric plant Luzula elegans.

scientific article published on 13 June 2016

Towards a whole-genome sequence for rye (Secale cereale L.).

scientific article

Towards recommendations for metadata and data handling in plant phenotyping.

scientific article published on 4 June 2015

Transcriptome analysis of mlo-mediated resistance in the epidermis of barley.

scientific article

Unlocking the barley genome by chromosomal and comparative genomics

scientific article published on 5 April 2011

Unlocking the secondary gene-pool of barley with next-generation sequencing

scientific article published on 6 July 2014

e!DAL--a framework to store, share and publish research data

scientific article

isa4j: a scalable Java library for creating ISA-Tab metadata

scientific article published in 2020

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