List of works - Stefan Bekiranov

A microarray-based genetic screen for yeast chronological aging factors

scientific article

A pan-cancer analysis of prognostic genes

scientific article

Activation of the pluripotency factor OCT4 in smooth muscle cells is atheroprotective

scientific article

Activin upregulation by NF-κB is required to maintain mesenchymal features of cancer stem-like cells in non-small cell lung cancer

scientific article

Amyloid beta precursor protein regulates male sexual behavior

scientific article

An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae

scientific article

Analysis of chromatin binding dynamics using the crosslinking kinetics (CLK) method

scientific article

Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression

scientific article

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

scientific article

Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins

scientific article

Combinatorial drug screening and molecular profiling reveal diverse mechanisms of intrinsic and adaptive resistance to BRAF inhibition in V600E BRAF mutant melanomas

scientific article

Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

scientific article

Compensatory Pathways Induced by MEK Inhibition Are Effective Drug Targets for Combination Therapy against Castration-Resistant Prostate Cancer ⬇️

scientific article published on June 28, 2011

Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication

scientific article

Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition

scientific article

Epigenetic methodologies for behavioral scientists ⬇️

scientific article published on October 15, 2010

Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays

scientific article

Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations

scientific article

Genome-wide analysis of functional sirtuin chromatin targets in yeast ⬇️

scientific article published on May 27, 2013

Genome-wide predictors of NF-κB recruitment and transcriptional activity

scientific article

Human adipose-derived stromal cells accelerate diabetic wound healing: impact of cell formulation and delivery

scientific article

Large-scale transcriptional activity in chromosomes 21 and 22

scientific article (publication date: 3 May 2002)

Measuring chromatin interaction dynamics on the second time scale at single-copy genes

scientific article

NF-κB regulates mesenchymal transition for the induction of non-small cell lung cancer initiating cells ⬇️

scientific article

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

scientific article

Probe selection for high-density oligonucleotide arrays ⬇️

scientific article published on September 19, 2003

Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications

scientific article

RNA synthesis is associated with multiple TBP-chromatin binding events

scientific article

RNA synthesis precision is regulated by preinitiation complex turnover

scientific article

Reelin is a target of polyglutamine expanded ataxin-7 in human spinocerebellar ataxia type 7 (SCA7) astrocytes ⬇️

scientific article published on December 10, 2012

Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma

scientific article

Temporal profile of replication of human chromosomes

scientific article

The Modifier of Transcription 1 (Mot1) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization

scientific article

The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression

scientific article

The network architecture of the Saccharomyces cerevisiae genome

scientific article

Thiamine biosynthesis in Saccharomyces cerevisiae is regulated by the NAD+-dependent histone deacetylase Hst1.

scientific article

Tolerogenic properties of lymphatic endothelial cells are controlled by the lymph node microenvironment

scientific article

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

scientific article

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

scientific article (publication date: 20 February 2004)

Use of yeast chemigenomics and COXEN informatics in preclinical evaluation of anticancer agents

scientific article

Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion

scientific article

List of works by Stefan Bekiranov

A microarray-based genetic screen for yeast chronological aging factors

A pan-cancer analysis of prognostic genes

Activation of the pluripotency factor OCT4 in smooth muscle cells is atheroprotective

Activin upregulation by NF-κB is required to maintain mesenchymal features of cancer stem-like cells in non-small cell lung cancer

Amyloid beta precursor protein regulates male sexual behavior

An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae

Analysis of chromatin binding dynamics using the crosslinking kinetics (CLK) method

Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins

Combinatorial drug screening and molecular profiling reveal diverse mechanisms of intrinsic and adaptive resistance to BRAF inhibition in V600E BRAF mutant melanomas

Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

Compensatory Pathways Induced by MEK Inhibition Are Effective Drug Targets for Combination Therapy against Castration-Resistant Prostate Cancer ⬇️

Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication

Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition

Epigenetic methodologies for behavioral scientists ⬇️

Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays

Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations

Genome-wide analysis of functional sirtuin chromatin targets in yeast ⬇️

Genome-wide predictors of NF-κB recruitment and transcriptional activity

Human adipose-derived stromal cells accelerate diabetic wound healing: impact of cell formulation and delivery

Large-scale transcriptional activity in chromosomes 21 and 22

Measuring chromatin interaction dynamics on the second time scale at single-copy genes

NF-κB regulates mesenchymal transition for the induction of non-small cell lung cancer initiating cells ⬇️

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

Probe selection for high-density oligonucleotide arrays ⬇️

Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications

RNA synthesis is associated with multiple TBP-chromatin binding events

RNA synthesis precision is regulated by preinitiation complex turnover

Reelin is a target of polyglutamine expanded ataxin-7 in human spinocerebellar ataxia type 7 (SCA7) astrocytes ⬇️

Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma

Temporal profile of replication of human chromosomes

The Modifier of Transcription 1 (Mot1) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization

The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression

The network architecture of the Saccharomyces cerevisiae genome

Thiamine biosynthesis in Saccharomyces cerevisiae is regulated by the NAD+-dependent histone deacetylase Hst1.

Tolerogenic properties of lymphatic endothelial cells are controlled by the lymph node microenvironment

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

Use of yeast chemigenomics and COXEN informatics in preclinical evaluation of anticancer agents

Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion