List of works by Jonathan Cooper

A Posteriori Error Analysis for the Use of Lookup Tables in Cardiac Electrophysiology Simulations

article by Jonathan Cooper et al published January 2010 in SIAM Journal on Scientific and Statistical Computing

A call for virtual experiments: accelerating the scientific process

scientific article

A computational study of discrete mechanical tissue models.

scientific article published on 15 April 2009

A model-driven approach to automatic conversion of physical units

article

A numerical guide to the solution of the bi-domain equations of cardiac electrophysiology

scientific article published on 27 May 2010

An integrated approach to quantitative modelling in angiogenesis research

scientific article

An integrative computational model for intestinal tissue renewal.

scientific article published on 20 July 2009

An overview of the CellML API and its implementation

scientific article

CHASTE: incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library

scientific article

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

scientific article

CellML 2.0.

scientific article published on 07 August 2020

CellML and associated tools and techniques

scientific article published on September 2008

Cellular cardiac electrophysiology modeling with Chaste and CellML.

scientific article

Chaste

scientific article published on 10 February 2013

Chaste: A test-driven approach to software development for biological modelling

article

Chaste: Cancer, Heart and Soft Tissue Environment

scientific article published on 13 March 2020

Chaste: an open source C++ library for computational physiology and biology

scientific article

Chaste: using agile programming techniques to develop computational biology software

scientific article

Computational assessment of drug-induced effects on the electrocardiogram: from ion channel to body surface potentials

scientific article published on February 2013

Connecting Models to Data in Multiscale Multicellular Tissue Simulations

scientific article published in 2013

Considerations for the use of cellular electrophysiology models within cardiac tissue simulations

scientific article published on 15 June 2011

Experience report

scientific article published in 2007

High-throughput functional curation of cellular electrophysiology models

scientific article published on 15 June 2011

Hodgkin-Huxley revisited: reparametrization and identifiability analysis of the classic action potential model with approximate Bayesian methods

scientific article

Minimum Information About a Simulation Experiment (MIASE)

scientific article

Models of the cardiac L‐type calcium current: A quantitative review

scientific article published in 2022

On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations

scientific article published in 2006

Reproducible model development in the Cardiac Electrophysiology Web Lab

article

Reproducible model development in the cardiac electrophysiology Web Lab

article

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). ⬇️

scientific article published on 19 March 2018

Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk ⬇️

scientific article

Ten simple rules for a successful cross-disciplinary collaboration

scientific article (publication date: April 2015)

Ten simple rules for effective computational research

scientific article (publication date: March 2014)

The Cardiac Electrophysiology Web Lab

scientific article

The Virtual Physiological Human ToolKit

scientific article

Toward a VPH/Physiome ToolKit

scientific article published on March 2010

TumorML: Concept and requirements of an in silico cancer modelling markup language

scientific article published in January 2011

cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians

scientific article published on 15 June 2022

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