List of works - Padraig Gleeson

25th Annual Computational Neuroscience Meeting: CNS-2016

scientific article

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3.

scientific article

A Commitment to Open Source in Neuroscience.

scientific article published in December 2017

A brief history of COMBINE

A declarative model specification system allowing NeuroML to be extended with user-defined component types.

scientific article published on 16 July 2012

Code Generation in Computational Neuroscience: A Review of Tools and Techniques

scientific article published on 05 November 2018

Computational Intelligence in Electrophysiology: Trends and Open Problems

Connectome to behaviour: modelling at cellular resolution

scientific article published on 10 September 2018

Development of NeuroML version 2.0: greater extensibility, support for abstract neuronal models and interaction with Systems Biology languages

scientific article

Geppetto: a reusable modular open platform for exploring neuroscience data and models

scientific article published on 10 September 2018

Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model

scientific article

Harmonizing semantic annotations for computational models in biology

scientific article published on 01 March 2019

Interoperability of neuroscience modeling software: current status and future directions

scientific article published on January 2007

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.

scientific article

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification.

scientific article

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

scientific article published on 26 April 2019

NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML

scientific article published in 2023

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

scientific article

OpenWorm: an open-science approach to modeling Caenorhabditis elegans

scientific article

OpenWorm: overview and recent advances in integrative biological simulation of

scientific article published on 10 September 2018

Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input.

scientific article published on August 2010

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

scientific article published on 18 December 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

scientific article published in September 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

scientific article published on 13 July 2019

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

scientific article published in March 2023

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Synaptic integration and NMDA spikes in a layer 5 pyramidal neuron model

scientific article

The SONATA data format for efficient description of large-scale network models

scientific article published on 24 February 2020

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

scientific article published on 29 June 2020

The importance of standards for sharing of computational models and data

scientific article published on 07 October 2019

The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex

scientific article

Toward standard practices for sharing computer code and programs in neuroscience.

scientific article

Updated energy budgets for neural computation in the neocortex and cerebellum

scientific article

c302: a multiscale framework for modelling the nervous system of

scientific article published on 10 September 2018

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience.

scientific article

neuroConstruct: a tool for modeling networks of neurons in 3D space

scientific article

List of works by Padraig Gleeson

25th Annual Computational Neuroscience Meeting: CNS-2016

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3.

A Commitment to Open Source in Neuroscience.

A brief history of COMBINE

A declarative model specification system allowing NeuroML to be extended with user-defined component types.

Code Generation in Computational Neuroscience: A Review of Tools and Techniques

Computational Intelligence in Electrophysiology: Trends and Open Problems

Connectome to behaviour: modelling at cellular resolution

Development of NeuroML version 2.0: greater extensibility, support for abstract neuronal models and interaction with Systems Biology languages

Geppetto: a reusable modular open platform for exploring neuroscience data and models

Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model

Harmonizing semantic annotations for computational models in biology

Harmonizing semantic annotations for computational models in biology

Interoperability of neuroscience modeling software: current status and future directions

LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification.

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

OpenWorm: an open-science approach to modeling Caenorhabditis elegans

OpenWorm: overview and recent advances in integrative biological simulation of

Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input.

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Synaptic integration and NMDA spikes in a layer 5 pyramidal neuron model

The SONATA data format for efficient description of large-scale network models

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

The importance of standards for sharing of computational models and data

The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex

Toward standard practices for sharing computer code and programs in neuroscience.

Updated energy budgets for neural computation in the neocortex and cerebellum

c302: a multiscale framework for modelling the nervous system of

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience.

neuroConstruct: a tool for modeling networks of neurons in 3D space