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List of works by Huseyin Kucuktas

A BAC-based physical map of the channel catfish genome

scientific article

A pilot study for channel catfish whole genome sequencing and de novo assembly

scientific article

Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons

article

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

scientific article

Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes

scientific article

Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus) ⬇️

scientific article published on April 23, 2011

Comparative analysis of catfish BAC end sequences with the zebrafish genome

scientific article

Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

scientific article published on 26 January 2009

DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment ⬇️

scientific article published on March 15, 2011

Development of the catfish 250K SNP array for genome-wide association studies

scientific article

Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus).

scientific article published on 11 August 2014

Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21.

scientific article published on 22 June 2007

Effect of nutrient restriction and re-feeding on calpain family genes in skeletal muscle of channel catfish (Ictalurus punctatus)

scientific article

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote ⬇️

scientific article published on November 5, 2012

Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium

scientific article published on 9 April 2007

Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence

scientific article published on 16 August 2011

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

scientific article

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

scientific article

Generation of physical map contig-specific sequences useful for whole genome sequence scaffolding

scientific article

Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)

scientific article

Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus).

scientific article

Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge

article

Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri

scientific article published on 27 June 2007

Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses ⬇️

scientific article published on January 11, 2011

Molecular characterization and differential expression of the myostatin gene in channel catfish (Ictalurus punctatus).

scientific article published in May 2002

Molecular characterization and expression analysis of the channel catfish cathepsin D genes ⬇️

scientific article published on May 1, 2011

Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment.

scientific article published in July 2010

Molecular characterization of complement factor I reveals constitutive expression in channel catfish

scientific article

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus).

scientific article

Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus).

scientific article published on 8 January 2011

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags

scientific article

NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish

scientific article published on 14 May 2009

Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors ⬇️

scientific article published on December 16, 2011

Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs) ⬇️

scientific article published on February 28, 2012

Quality assessment parameters for EST-derived SNPs from catfish

scientific article

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish ⬇️

scientific article published on April 30, 2013

Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map

scientific article

Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri

scientific article published in June 2004

Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus

scientific article

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

scientific article

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

scientific article

The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri

scientific article published on 26 November 2007

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs

scientific article

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