List of works by Jill Wegrzyn

A genome sequence for the threatened whitebark pine

scientific article published in 2024

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana).

scientific article published on 31 October 2016

Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L.

scientific article

Association genetics of chemical wood properties in black poplar (Populus nigra).

scientific article published on 16 November 2012

Association genetics of coastal Douglas fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-hardiness related traits

scientific article published on June 2009

Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential

scientific article

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

scientific article published on 30 November 2011

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

scientific article published on 10 September 2010

Association mapping of quantitative disease resistance in a natural population of loblolly pine (Pinus taeda L.).

scientific article

Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms.

scientific article published in July 2013

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

scientific article published on 13 August 2010

Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites

scientific article

CartograTree: connecting tree genomes, phenotypes and environment

scientific article published on 25 February 2013

ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications

scientific article

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome

scientific article

Comparative Transcriptomics Among Four White Pine Species

scientific article published on 20 March 2018

Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera

scientific article published on 16 February 2022

Comparative genomics of six Juglans species reveals disease-associated gene family contractions

scientific article published on 10 December 2019

Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests

scientific article (publication date: November 2012)

Cyberinfrastructure and resources to enable an integrative approach to studying forest trees

scientific article published on 03 November 2019

Cysteine Cathepsins in the secretory vesicle produce active peptides: Cathepsin L generates peptide neurotransmitters and cathepsin B produces beta-amyloid of Alzheimer's disease

scientific article published on 8 September 2011

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

scientific article

Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation)

article

Demonstration of GTG as an alternative initiation codon for the serpin endopin 2B-2.

scientific article published in February 2005

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

scientific article

Discovering candidate genes that regulate resin canal number in Pinus taeda stems by integrating genetic analysis across environments, ages, and populations

scientific article published on 30 September 2014

Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies)

scientific article (publication date: July 2012)

EnTAP: Bringing faster and smarter functional annotation to non-model eukaryotic transcriptomes

scientific article published on 31 December 2019

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article published on October 2017

Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes

scientific article published on 31 May 2021

Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource.

scientific article

Green plant genomes: What we know in an era of rapidly expanding opportunities

scientific article published on 18 January 2022

Insights into the loblolly pine genome: characterization of BAC and fosmid sequences

scientific article

JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process

scientific article published on 6 March 2018

Lineage, fate, and fate potential of NG2-glia.

scientific article published on 21 August 2015

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus).

scientific article published on 18 October 2013

Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii).

scientific article published on 13 July 2009

NLR diversity and candidate fusiform rust resistance genes in loblolly pine

scientific article published in 2021

Neuropeptidomic components generated by proteomic functions in secretory vesicles for cell-cell communication

scientific article

New extension software modules to enhance searching and display of transcriptome data in Tripal databases

scientific article published in January 2017

Open access to tree genomes: the path to a better forest

scientific article (publication date: 24 June 2013)

Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae).

scientific article

PineSAP--sequence alignment and SNP identification pipeline

scientific article

Poor maternal nutrition during gestation alters the expression of genes involved in muscle development and metabolism in lambs.

scientific article published on July 2016

Proteases for processing proneuropeptides into peptide neurotransmitters and hormones

scientific article published on January 2008

Proteomics of dense core secretory vesicles reveal distinct protein categories for secretion of neuroeffectors for cell-cell communication

scientific article

Proteomics of neuroendocrine secretory vesicles reveal distinct functional systems for biosynthesis and exocytosis of peptide hormones and neurotransmitters

scientific article published on 5 April 2007

Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine

scientific article

SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection

article published in 2012

Sequence of the Sugar Pine Megagenome

scientific article published on 28 October 2016

Sequencing and assembly of the 22-gb loblolly pine genome

scientific article

Standards recommendations for the Earth BioGenome Project

scientific article published on 18 January 2022

Strategies of tolerance reflected in two North American maple genomes

scientific article published on 30 December 2021

Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome

scientific article

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae

scientific article published on 27 July 2017

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

scientific article

The evolutionary genetics of the genes underlying phenotypic associations for loblolly pine (Pinus taeda, Pinaceae)

scientific article (publication date: December 2013)

The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases

scientific article

The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols

scientific article published on 3 May 2016

Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.

scientific article published on 24 July 2017

Transcriptome Analysis Reveals Differential Gene Expression and a Possible Role of Gibberellins in a Shade-Tolerant Mutant of Perennial Ryegrass

scientific article published on 26 May 2017

Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife.

scientific article published on 24 December 2016

TreeGenes: A forest tree genome database

scientific article published on January 2008

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation

scientific article

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA.

scientific article

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut

scientific article

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