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List of works by Elzo de Wit

4C technology: protocols and data analysis.

scientific article

A decade of 3C technologies: insights into nuclear organization

scientific article published on January 2012

A natural WNT signaling variant potently synergizes with Cdkn2ab loss in skin carcinogenesis

scientific article published on 29 March 2019

A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

scientific article

A transient absence of SMC-mediated loops after mitosis

scientific article published on 01 November 2019

CTCF Binding Polarity Determines Chromatin Looping.

scientific article published on 27 October 2015

CTCF: a Swiss-army knife for genome organization and transcription regulation.

scientific article

Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming

scientific article

Characterization and dynamics of pericentromere-associated domains in mice

scientific article

Characterization of the Drosophila melanogaster genome at the nuclear lamina

scientific article published on 30 July 2006

Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies

scientific article published on 14 October 2008

Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex

scientific article

DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus

scientific article

Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

scientific article

Discovery and validation of sub-threshold genome-wide association study loci using epigenomic signatures

scientific article (publication date: 10 May 2016)

Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location

scientific article

Enhancer hubs and loop collisions identified from single-allele topologies

scientific article published on 09 July 2018

Erratum: Corrigendum: Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

scholarly article published in Nature Genetics

Genome-wide HP1 binding in Drosophila: developmental plasticity and genomic targeting signals

scientific article

Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling

scientific article published on January 2013

Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster

scientific article published on 20 April 2006

Global chromatin domain organization of the Drosophila genome

scientific article

Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer

scientific article published on 16 July 2021

HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila

scientific article published on 25 January 2007

High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila

scientific article published on October 2015

High-resolution mapping reveals links of HP1 with active and inactive chromatin components

scientific article published in March 2007

High-throughput identification of human SNPs affecting regulatory element activity

scientific article published on 28 June 2019

Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

scholarly article

Human heterochromatin proteins form large domains containing KRAB-ZNF genes

scientific article published on 12 October 2006

In Vivo imaging reveals extracellular vesicle-mediated phenocopying of metastatic behavior

scientific article published on May 2015

Limitations and possibilities of small RNA digital gene expression profiling

scientific article published in July 2009

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

scientific article

Plasticity between Epithelial and Mesenchymal States Unlinks EMT from Metastasis-Enhancing Stem Cell Capacity

scientific article published on 2 March 2016

Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells

scientific article

Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

scientific article published on 21 November 2015

Quantitative comparison of cDNA-AFLP, microarrays, and GeneChip expression data in Saccharomyces cerevisiae

scientific article published in December 2003

Repertoire and evolution of miRNA genes in four divergent nematode species

scientific article

Robust 4C-seq data analysis to screen for regulatory DNA interactions.

scientific article

SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila

scientific article published in July 2007

Small RNA expression and strain specificity in the rat

scientific article

Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.

scientific article published on 17 August 2014

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension

scientific article

The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist

scientific article published on 27 May 2019

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

scientific article

The pluripotent genome in three dimensions is shaped around pluripotency factors

scientific article published on 24 July 2013

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination.

scientific article published on 22 October 2015

Unexpected gene activation following CRISPR-Cas9-mediated genome editing

scientific article published on 20 December 2021

Variegated gene expression caused by cell-specific long-range DNA interactions

scientific article published on 26 June 2011

WAPL maintains a cohesin loading cycle to preserve cell-type-specific distal gene regulation

scientific article published on 14 December 2020

eRNAs are required for p53-dependent enhancer activity and gene transcription

scientific article

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