List of works - Raktima Raychowdhury

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks ⬇️

scientific article published on 16 July 2015

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

scientific article

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

scientific article published on 30 August 2012

A single-cell survey of the small intestinal epithelium

scientific article published on 8 November 2017

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

scientific article

Autoinduction of the trefoil factor 2 (TFF2) promoter requires an upstream cis-acting element

scientific article (publication date: 26 April 2002)

CD209a expression on dendritic cells is critical for the development of pathogenic Th17 cell responses in murine schistosomiasis

scientific article

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

scientific article published on 17 March 2013

Full-length transcriptome assembly from RNA-Seq data without a reference genome

scientific article

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of transcripts under balancing selection

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies

scientific article

Identification and characterization of a third gastrin response element (GAS-RE3) in the human histidine decarboxylase gene promoter

scientific article (publication date: 11 October 2002)

Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens

scientific article published on 12 February 2015

Interaction of early growth response protein 1 (Egr-1), specificity protein 1 (Sp1), and cyclic adenosine 3'5'-monophosphate response element binding protein (CREB) at a proximal response element is critical for gastrin-dependent activation of the c

scientific article published on December 2002

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

scientific article

Semiconductor-based DNA sequencing of histone modification states

scientific article published on January 2013

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

scientific article

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

scientific article (publication date: 13 June 2013)

The heavy chain of neonatal Fc receptor for IgG is sequestered in endoplasmic reticulum by forming oligomers in the absence of beta2-microglobulin association

scientific article published on November 2002

Transcriptional switch of dormant tumors to fast-growing angiogenic phenotype

scientific article

List of works by Raktima Raychowdhury

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks ⬇️

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

A single-cell survey of the small intestinal epithelium

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

Autoinduction of the trefoil factor 2 (TFF2) promoter requires an upstream cis-acting element

CD209a expression on dendritic cells is critical for the development of pathogenic Th17 cell responses in murine schistosomiasis

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of transcripts under balancing selection

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies

Identification and characterization of a third gastrin response element (GAS-RE3) in the human histidine decarboxylase gene promoter

Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens

Interaction of early growth response protein 1 (Egr-1), specificity protein 1 (Sp1), and cyclic adenosine 3'5'-monophosphate response element binding protein (CREB) at a proximal response element is critical for gastrin-dependent activation of the c

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

Semiconductor-based DNA sequencing of histone modification states

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

The heavy chain of neonatal Fc receptor for IgG is sequestered in endoplasmic reticulum by forming oligomers in the absence of beta2-microglobulin association

Transcriptional switch of dormant tumors to fast-growing angiogenic phenotype