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List of works by Rahul Satija

A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians

scientific article published in December 2015

A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks ⬇️

scientific article published on 16 July 2015

A single cell transcriptional roadmap for cardiopharyngeal fate diversification

scientific article published on 15 June 2017

A single-cell transcriptional roadmap for cardiopharyngeal fate diversification

scientific article published on 03 June 2019

An atlas of healthy and injured cell states and niches in the human kidney ⬇️

Author Correction: The bone marrow microenvironment at single-cell resolution

scientific article published on 01 August 2019

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC

scientific article

Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

article

Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens

scientific article

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements

scientific article published on 18 March 2008

Comparative analysis of RNA sequencing methods for degraded or low-input samples

scientific article

Comprehensive Integration of Single-Cell Data

scientific article published on 06 June 2019

Corrigendum: Landscape of X chromosome inactivation across human tissues

scientific article published in Nature

Deconstructing transcriptional heterogeneity in pluripotent stem cells

scientific article published on December 2014

Developmental diversification of cortical inhibitory interneurons.

scientific article published on 5 March 2018

Dynamic regulatory network controlling TH17 cell differentiation

scientific article published on 6 March 2013

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

scientific article published in Nature

Erratum: Strength in numbers from integrated single-cell neuroscience

scientific article published on 01 September 2018

Heterogeneity in immune responses: from populations to single cells

scientific article

High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis

scientific article

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

scientific article

Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs.

scientific article

Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens

scientific article published on 12 February 2015

Integrated analysis of multimodal single-cell data

scientific article

Integrating single-cell transcriptomic data across different conditions, technologies, and species

scientific article published on 02 April 2018

Integrative single-cell analysis

scientific article published on 01 May 2019

Kinetics of adult hematopoietic stem cell differentiation in vivo

scientific article published on 05 October 2018

Landscape of X chromosome inactivation across human tissues

scientific article published on October 2017

Landscape of X chromosome inactivation across human tissues

MERFISHing for spatial context

scientific article published on 23 May 2015

Molecular transitions in early progenitors during human cord blood hematopoiesis.

scientific article published on 15 March 2018

Multimodal single-cell chromatin analysis with Signac

scientific article

Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells.

scientific article

Niche-Selective Inhibition of Pathogenic Th17 Cells by Targeting Metabolic Redundancy

scientific article published on 24 June 2020

Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

scientific article published on 23 December 2019

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

scientific article published on 30 October 2020

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

scientific article

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

article

Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites

scientific article

Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features

scientific article published on 18 June 2018

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing

scientific article

Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions

scientific article

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

scientific article published on 03 June 2021

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

scientific article

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

Simultaneous epitope and transcriptome measurement in single cells

scientific article published on 31 July 2017

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

scientific article

Single-cell RNA sequencing to explore immune cell heterogeneity

scientific article

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

scientific article published on 23 February 2018

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

scientific article

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

scientific article

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

scientific article published on 2 November 2016

Single-cell analysis reveals key roles for Bcl11a in regulating stem cell fate decisions

scientific article published on 21 September 2015

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

scientific article (publication date: 13 June 2013)

Spatial reconstruction of single-cell gene expression data

scientific article

Stochastic models of sequence evolution including insertion-deletion events

scientific article published on 16 February 2009

Strength in numbers from integrated single-cell neuroscience

scientific article published in January 2018

The Atypical Calpains: Evolutionary Analyses and Roles in Caenorhabditis elegans Cellular Degeneration ⬇️

scientific article published on March 29, 2012

The Human Cell Atlas

scientific article

The Human Cell Atlas

The Regulatory Factor ZFHX3 Modifies Circadian Function in SCN via an AT Motif-Driven Axis

scientific journal article

The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo

scientific article published on 13 January 2012

The bone marrow microenvironment at single-cell resolution

scientific article published on 10 April 2019

The genome of the sea urchin Strongylocentrotus purpuratus

scientific article

The strength and pattern of natural selection on gene expression in rice

scientific article published on 12 February 2020

Toward a Common Coordinate Framework for the Human Body

scientific article published on 01 December 2019

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

scientific article

Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer

scientific article

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