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List of works by Sophie Arnaud-Haond

A Well-Kept Treasure at Depth: Precious Red Coral Rediscovered in Atlantic Deep Coral Gardens (SW Portugal) after 300 Years

scientific article

Assessing Genetic Diversity in Clonal Organisms: Low Diversity or Low Resolution? Combining Power and Cost Efficiency in Selecting Markers

scientific article published on 02 March 2005

Better off alone? Compared performance of monoclonal and polyclonal stands of a cultivated red alga growth

scientific article published on 22 January 2020

Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites

scientific article published on 30 August 2015

Biogeography revisited with network theory: retracing the history of hydrothermal vent communities

scientific article

Characterization of 15 polymorphic microsatellite loci in Rimicaris exoculata, and cross-amplification in other hydrothermal-vent shrimp

article published in 2011

Climate-induced changes in the suitable habitat of cold-water corals and commercially important deep-sea fishes in the North Atlantic

scientific article published on 20 February 2020

ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps.

scientific article

Cold-Water Coral Habitats in Submarine Canyons of the Bay of Biscay

Comparative Analysis of Stability—Genetic Diversity in Seagrass (Posidonia oceanica) Meadows Yields Unexpected Results

article

Connecting MPAs - eight challenges for science and management

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology

scientific article published on 24 September 2020

Correction: A Well-Kept Treasure at Depth: Precious Red Coral Rediscovered in Atlantic Deep Coral Gardens (SW Portugal) after 300 Years.

scientific article published on 26 February 2016

Dedicated population genomics for the silent world: the specific questions of marine population genetics.

scientific article published on 3 November 2016

Discriminating micropathogen lineages and their reticulate evolution through graph theory-based network analysis: the case of Trypanosoma cruzi, the agent of Chagas disease

scientific article

Disentangling the Influence of Mutation and Migration in Clonal Seagrasses Using the Genetic Diversity Spectrum for Microsatellites.

scientific article published on 19 March 2014

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean-Atlantic Gradient

scientific article published on 01 November 2021

EDENetworks: a user-friendly software to build and analyse networks in biogeography, ecology and population genetics

scientific article published on 26 June 2014

Entangled effects of allelic and clonal (genotypic) richness in the resistance and resilience of experimental populations of the seagrass Zostera noltii to diatom invasion ⬇️

scientific article

Entangled fates of holobiont genomes during invasion: nested bacterial and host diversities in Caulerpa taxifolia.

scientific article

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

scientific article published on 12 April 2021

Evolutionary and Ecological Trees and Networks

article

Evolutionary patterns in pearl oysters of the genus Pinctada (Bivalvia: Pteriidae).

scientific article published on 27 March 2010

Expressed sequence tags from heat-shocked seagrass Zostera noltii (Hornemann) from its southern distribution range

scientific article

Fair and equitable sharing of benefits from the utilization of marine genetic resources in areas beyond national jurisdiction: Bridging the gaps between science and policy

scholarly article by Arianna Broggiato published in November 2014

Feces DNA analyses track the rehabilitation of a free-ranging beluga whale

scientific article published on 19 April 2022

Feed-backs between genetic structure and perturbation-driven decline in seagrass (Posidonia oceanica) meadows

Genetic differentiation and secondary contact zone in the seagrassCymodocea nodosaacross the Mediterranean-Atlantic transition region

Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system

scientific article published in 2013

Genetic flow directionality and geographical segregation in a Cymodocea nodosa genetic diversity network

Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness

article

Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations.

scientific article published in October 2006

Genetic structure in the Mediterranean seagrass Posidonia oceanica: disentangling past vicariance events from contemporary patterns of gene flow.

scientific article published on 30 December 2009

Genetic structure of wild European populations of the invasive Pacific oyster Crassostrea gigas due to aquaculture practices

scientific article published in 2012

Global genetic resources. Marine biodiversity and gene patents.

scientific article

High connectivity across the fragmented chemosynthetic ecosystems of the deep Atlantic Equatorial Belt: efficient dispersal mechanisms or questionable endemism?

scientific article

Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa).

scientific article published on 22 June 2015

Implications of Extreme Life Span in Clonal Organisms: Millenary Clones in Meadows of the Threatened Seagrass Posidonia oceanica ⬇️

scientific article published on January 1, 2012

Influence of Water Masses on the Biodiversity and Biogeography of Deep-Sea Benthic Ecosystems in the North Atlantic

scientific article published on 21 April 2020

Invasion Is a Community Affair: Clandestine Followers in the Bacterial Community Associated to Green Algae, Caulerpa racemosa, Track the Invasion Source ⬇️

scientific article published on July 16, 2013

Investigation of bacterial communities within the digestive organs of the hydrothermal vent shrimp Rimicaris exoculata provide insights into holobiont geographic clustering

scientific article

Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded Pacific populations of the pearl oyster Pinctada margaritifera

scientific article published in May 2003

Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the "grey zone" of differentiation?

scientific article published on 22 February 2018

Large-scale population genetic structure in Bonelli's EagleAquila fasciata

scientific article published in 2013

Linking basin-scale connectivity, oceanography and population dynamics for the conservation and management of marine ecosystems

article

Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling

scholarly article by Ronan Becheler published in November 2017

Marine litter in submarine canyons of the Bay of Biscay

scholarly article by Inge M.J. van den Beld published in November 2017

Metabarcoding confirms the opportunistic foraging behaviour of Atlantic bluefin tuna and reveals the importance of gelatinous prey

scientific article published on 13 August 2021

Metabarcoding is powerful yet still blind: a comparative analysis of morphological and molecular surveys of seagrass communities

scientific article

Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients

scientific article published on 08 June 2021

Microsatellite markers developed through pyrosequencing allow clonal discrimination in the invasive alga Caulerpa taxifolia

Network analysis identifies weak and strong links in a metapopulation system

scientific article

New insights into the population genetics of partially clonal organisms: when seagrass data meet theoretical expectations

scientific article published on 02 July 2020

Not out of the Mediterranean: Atlantic populations of the gorgonian <i>Paramuricea clavata</i> are a separate sister species under further lineage diversification

scientific article published in January 2023

PCR survey of 50 introns in animals: cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla

scientific article

Panmixia in a Fragmented and Unstable Environment: The Hydrothermal Shrimp Rimicaris exoculata Disperses Extensively along the Mid-Atlantic Ridge ⬇️

scientific article published on June 5, 2012

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

scientific article published on 11 March 2019

Patterns of bacteria-host associations suggest different ecological strategies between two reef building cold-water coral species

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

scientific article published on 04 February 2022

Pearl formation: persistence of the graft during the entire process of biomineralization.

scientific article

Phylogeny and diversification patterns among vesicomyid bivalves

scientific article (publication date: 2012)

Physical proximity may promote lateral acquisition of bacterial symbionts in vesicomyid clams

scientific article (publication date: 2013)

RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets inr

article by Diane Bailleul et al published 16 March 2016 in Methods in Ecology and Evolution

Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms

scientific article

Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge

Restriction to large-scale gene flow vs. regional panmixia among cold seep Escarpia spp. (Polychaeta, Siboglinidae).

scientific article

Rising the Persian Gulf Black-Lip Pearl Oyster to the Species Level: Fragmented Habitat and Chaotic Genetic Patchiness in Pinctada persica

SELECTIVE ELIMINATION OF CHLOROPLASTIDIAL DNA FOR METAGENOMICS OF BACTERIA ASSOCIATED WITH THE GREEN ALGA CAULERPA TAXIFOLIA (BRYOPSIDOPHYCEAE)(1).

scientific article

SSR-based analysis of clonality, spatial genetic structure and introgression from the Lombardy poplar into a natural population of Populus nigra L. along the Loire River

Scaling of processes shaping the clonal dynamics and genetic mosaic of seagrasses through temporal genetic monitoring.

scientific article published on 11 September 2013

Spat collection of the pearl oyster (Pinctada margaritifera cumingii) in French Polynesia: an evaluation of the potential impact on genetic variability of wild and farmed populations after 20 years of commercial exploitation

article

Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla

scientific article published in 2022

Spatio-temporal variation in the genetic composition of wild populations of pearl oyster (Pinctada margaritifera cumingii) in French Polynesia following 10 years of juvenile translocation.

scientific article

Species are hypotheses: avoid connectivity assessments based on pillars of sand

scientific article published on 19 January 2015

Spectrum of genetic diversity and networks of clonal organisms.

scientific article published on December 2007

Systematic Conservation Planning at an Ocean Basin Scale: Identifying a Viable Network of Deep-Sea Protected Areas in the North Atlantic and the Mediterranean

scientific article published on 30 June 2021

The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots

scientific article published on 04 September 2020

The concept of population in clonal organisms: mosaics of temporally colonized patches are forming highly diverse meadows of Zostera marina in Brittany

scientific article published on 10 May 2010

The discernible and hidden effects of clonality on the genotypic and genetic states of populations: improving our estimation of clonal rates

scientific article published on 01 January 2021

The promise and limits of DNA based approach to infer diet flexibility in endangered top predators

scientific article published on 02 December 2021

Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond

Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis ⬇️

scientific article published on January 31, 2011

Unifying approaches to Functional Marine Connectivity for improved marine resource management: the European SEA-UNICORN COST Action

scientific article

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

scientific article

Vicariance patterns in the Mediterranean Sea: east?west cleavage and low dispersal in the endemic seagrass Posidonia oceanica

What lies underneath: conserving the oceans' genetic resources

scientific article

Within-population spatial genetic structure, neighbourhood size and clonal subrange in the seagrass Cymodocea nodosa

scientific article published in August 2005

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