Search filters

List of works by Michele Ceccarelli

"Stockpile" of Slight Transcriptomic Changes Determines the Indirect Genotoxicity of Low-Dose BPA in Thyroid Cells

scientific article

31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two: National Harbor, MD, USA. 9-13 November 2016

scientific article published oln 16 November 2016

A deformable grid-matching approach for microarray images

scientific article published in October 2006

A negative selection heuristic to predict new transcriptional targets ⬇️

scientific article published on January 14, 2013

Automated identification and location analysis of marked stem cells colonies in optical microscopy images

scientific article

Cancer-related CD15/FUT4 overexpression decreases benefit to agents targeting EGFR or VEGF acting as a novel RAF-MEK-ERK kinase downstream regulator in metastatic colorectal cancer.

scientific article

Circulating microRNAs expression profile in newly diagnosed and imatinib treated chronic phase - chronic myeloid leukemia

scientific article published on 06 September 2018

Comparison between invasive breast cancer with extensive peritumoral vascular invasion and inflammatory breast carcinoma: a clinicopathologic study of 161 cases

scientific article published in September 2014

Correction to: Toward a comprehensive view of cancer immune responsiveness: a synopsis from the SITC workshop

scientific article published on 04 July 2019

Cross-species toxicogenomic analyses and phenotypic anchoring in response to groundwater low-level pollution

scientific article

Data Mining in Cancer Research [Application Notes

scientific article published in February 2010

De novo reconstruction of gene regulatory networks from time series data, an approach based on formal methods

scientific article

Deep learning predicts short non-coding RNA functions from only raw sequence data

scientific article published on 11 November 2020

Detection of statistically significant network changes in complex biological networks

scientific article

Disentangling the relationship between tumor genetic programs and immune responsiveness

scientific article published on 8 March 2016

Ensemble of gene signatures identifies novel biomarkers in colorectal cancer activated through PPARγ and TNFα signaling

scientific article

Evaluation of low doses BPA-induced perturbation of glycemia by toxicogenomics points to a primary role of pancreatic islets and to the mechanism of toxicity.

scientific article

Finding recurrent copy number alterations preserving within-sample homogeneity

scientific article published on 25 August 2011

Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning ⬇️

scientific article published on November 15, 2011

IRIS: a method for reverse engineering of regulatory relations in gene networks

scientific article

Identification and Validation of HCC-specific Gene Transcriptional Signature for Tumor Antigen Discovery

scientific article published on 08 July 2016

Identification of a novel gene signature of ES cells self-renewal fluctuation through system-wide analysis

scientific article

Immune escape mechanisms in colorectal cancer pathogenesis and liver metastasis

scientific article

Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy

scientific article published on 2 February 2023

Learning gene regulatory networks from only positive and unlabeled data

scientific article

Metabolic effects of the iodothyronine functional analogue TRC150094 on the liver and skeletal muscle of high-fat diet fed overweight rats: an integrated proteomic study.

scientific article published on 27 April 2012

Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

scientific article published on January 2016

Novel pancreas organogenesis markers refine the pancreatic differentiation roadmap of embryonic stem cells

scientific article published in April 2014

Pathways affected by 3,5-diiodo-l-thyronine in liver of high fat-fed rats: evidence from two-dimensional electrophoresis, blue-native PAGE, and mass spectrometry

scientific article published on 16 September 2010

Pesticide toxicogenomics across scales: in vitro transcriptome predicts mechanisms and outcomes of exposure in vivo

scientific article (publication date: December 2016)

Retinoic Acid Specifically Enhances Embryonic Stem Cell Metastate Marked by Zscan4

scientific article (publication date: 2016)

Segmentation of 3D microscopy data with an energy based interaction model

Signaling networks associated with AKT activation in non-small cell lung cancer (NSCLC): new insights on the role of phosphatydil-inositol-3 kinase

scientific article

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer.

scientific article published on May 2015

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

scientific article

TRAF7 protein promotes Lys-29-linked polyubiquitination of IkappaB kinase (IKKgamma)/NF-kappaB essential modulator (NEMO) and p65/RelA protein and represses NF-kappaB activation

scientific article published on 25 April 2011

The Akt1/IL-6/STAT3 pathway regulates growth of lung tumor initiating cells

scientific article published on 13 October 2015

The chromatin remodelling component SMARCB1/INI1 influences the metastatic behavior of colorectal cancer through a gene signature mapping to chromosome 22.

scientific article

The molecular landscape of glioma in patients with Neurofibromatosis 1

scientific article published on 10 December 2018

The possible role of chromosome X variability in hypertensive familiarity

scientific article published on 25 February 2016

Time-lapse phase-contrast microscopy fibroblast automated tracking

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

scientific article

Toward a comprehensive view of cancer immune responsiveness: a synopsis from the SITC workshop

scientific article published on 22 May 2019

Transforming fusions of FGFR and TACC genes in human glioblastoma

scientific article

UHRF1 coordinates peroxisome proliferator activated receptor gamma (PPARG) epigenetic silencing and mediates colorectal cancer progression.

scientific article published on 30 January 2012

Upregulation of miR-21 by Ras in vivo and its role in tumor growth.

scientific article published on 18 October 2010

VEGA: variational segmentation for copy number detection

scientific article

VEGAWES: variational segmentation on whole exome sequencing for copy number detection

scientific article published on 29 September 2015

VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets ⬇️

scientific article published on July 18, 2012

Virtual genetic coding and time series analysis for alternative splicing prediction in C. elegans.

scientific article

Paulina is supported by:

About Paulina

Help