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List of works by Luke Swenson

"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice

scientific article

Calibration and accuracy of the geno2pheno co-receptor algorithm for predicting HIV tropism for single and triplicate measurements of V3 genotype.

scientific article

Comparative performances of HIV-1 RNA load assays at low viral load levels: results of an international collaboration.

scientific article published on 04 December 2013

Deep V3 Sequencing for HIV Type 1 Tropism in Treatment-Naive Patients: A Reanalysis of the MERIT Trial of Maraviroc

article

Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients

scientific article published on January 2011

Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing

scientific article

Development of a novel codon-specific polymerase chain reaction for the detection of CXCR4-utilizing HIV type 1 subtype B.

scientific article published on 6 March 2013

Factors influencing the sensitivity and specificity of conventional sequencing in human immunodeficiency virus type 1 tropism testing.

scientific article published on 21 November 2012

Genotypic analysis of the V3 region of HIV from virologic nonresponders to maraviroc-containing regimens reveals distinct patterns of failure

scientific article published on 30 September 2013

Genotypic inference of HIV-1 tropism using population-based sequencing of V3.

scientific article published on 27 December 2010

HIV coreceptor phenotyping in the clinical setting.

scientific article published on July 2008

HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure

scientific article

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

scientific article

Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA.

scientific article published in August 2010

Influence of amount and percentage of CXCR4-using virus in predicting week 48 responses to maraviroc in treatment-naïve patients

article

Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially

scientific article published in January 2011

Next-generation sequencing to assess HIV tropism

scientific article published on September 2012

Performance of HIV-1 drug resistance testing at low-level viremia and its ability to predict future virologic outcomes and viral evolution in treatment-naive individuals

scientific article published on 14 January 2014

Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.

scientific article

Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing

scientific article

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

scientific article (publication date: November 2012)

Reply to "Issues on results of the external quality assessment for proviral DNA testing of HIV-1 Tropism in the Maraviroc Switch collaborative study".

scientific article published on December 2013

Results of external quality assessment for proviral DNA testing of HIV tropism in the Maraviroc Switch collaborative study

scientific article published on 17 April 2013

Short-term variation of HIV tropism readouts in the absence of CCR5 antagonists

article

Technical and regulatory shortcomings of the TaqMan version 1 HIV viral load assay

scientific article

Use of Cellular HIV DNA to Predict Virologic Response to Maraviroc: Performance of Population-Based and Deep Sequencing

scientific article published on 21 February 2013

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